View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5845_high_19 (Length: 243)
Name: NF5845_high_19
Description: NF5845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5845_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 455289 - 455495
Alignment:
| Q |
1 |
catgatcaatcttactccagcagtcacatttgttatagcaacctttgttgggtaattatatactaatcttactaaactcaacttaattacttttgttgag |
100 |
Q |
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| T |
455289 |
catgatcaatcttactccagcagtcacatttgttatagcaacctttgttgggtaattatatactaatcttactaaactcaactta----cttttgttgag |
455384 |
T |
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| Q |
101 |
tttgaatcatttttattgaatatattacagaatggagaaagtgaatattcaaagtttgagaactatagccaaaatagttgggacaatgatatgtgttact |
200 |
Q |
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| T |
455385 |
tttgaatcatttttattgaatatattacagaatggagaaagtgaatattcaaagtttgagaactatagccaaaatagttgggacaatgatatgtgttact |
455484 |
T |
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| Q |
201 |
ggagcagtgtc |
211 |
Q |
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||||||||||| |
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| T |
455485 |
ggagcagtgtc |
455495 |
T |
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Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 115 - 211
Target Start/End: Original strand, 467683 - 467779
Alignment:
| Q |
115 |
attgaatatattacagaatggagaaagtgaatattcaaagtttgagaactatagccaaaatagttgggacaatgatatgtgttactggagcagtgtc |
211 |
Q |
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| T |
467683 |
attgattatattacagaatggaaaaagtgaatattcgaagtataagaactatagccaaaatagtggggacaattatatgtgtaagtggagcagtgtc |
467779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 115 - 214
Target Start/End: Original strand, 446673 - 446772
Alignment:
| Q |
115 |
attgaatatattacagaatggagaaagtgaatattcaaagtttgagaactatagccaaaatagttgggacaatgatatgtgttactggagcagtgtccat |
214 |
Q |
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| T |
446673 |
attgattatattacagaatggagaaattcaatattcgaagtatgagaactatagccaaaatagtgggaacaataatatgtgtttgtggagcaatgtccat |
446772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 120 - 211
Target Start/End: Original strand, 474722 - 474813
Alignment:
| Q |
120 |
atatattacagaatggagaaagtgaatattcaaagtttgagaactatagccaaaatagttgggacaatgatatgtgttactggagcagtgtc |
211 |
Q |
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||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||| |||||| | ||||||||| ||||||| |||| |
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| T |
474722 |
atatattacagaatggagaaagtcaacattcgaagtttgagaactatagccaaaatagtagggacattaatatgtgtttgtggagcattgtc |
474813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 121 - 208
Target Start/End: Original strand, 480070 - 480157
Alignment:
| Q |
121 |
tatattacagaatggagaaagtgaatattcaaagtttgagaactatagccaaaatagttgggacaatgatatgtgttactggagcagt |
208 |
Q |
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| T |
480070 |
tatattacagaatggagaaagtaaatattcgaagtatgagaactatagccaaaatagtggggacagtgatatgtataagtggagcagt |
480157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 479948 - 479990
Alignment:
| Q |
16 |
tccagcagtcacatttgttatagcaacctttgttgggtaatta |
58 |
Q |
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| T |
479948 |
tccagcagtcacatttgtaatagcagcctttgtagggtaatta |
479990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 119 - 210
Target Start/End: Complemental strand, 27491653 - 27491562
Alignment:
| Q |
119 |
aatatattacagaatggagaaagtgaatattcaaagtttgagaactatagccaaaatagttgggacaatgatatgtgttactggagcagtgt |
210 |
Q |
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| T |
27491653 |
aatattttacagaatggagcaagtgaatattagaagtttgagaactatagccaaaataataggaacaattataggtgtaagtggagcagtgt |
27491562 |
T |
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