View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5845_high_20 (Length: 242)
Name: NF5845_high_20
Description: NF5845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5845_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 148 - 226
Target Start/End: Original strand, 45389625 - 45389703
Alignment:
| Q |
148 |
caaaatagcaattcccacttcaacagaaagtataccaatcttacaaaattgaaaattatatggtccatatgtagagtat |
226 |
Q |
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| T |
45389625 |
caaaatagcaattcccacttcaacagaaagtataccaatcttacaaaattgaaaattctatggtccatatgtagagtat |
45389703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 45389478 - 45389530
Alignment:
| Q |
1 |
ttatccattctttttaacaatatatcttatcaaaaaagtaattgaaatcaaac |
53 |
Q |
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| T |
45389478 |
ttatccattctttttaacaatatatcttatcaaaaaagtaattgatatcaaac |
45389530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 226
Target Start/End: Complemental strand, 31890679 - 31890602
Alignment:
| Q |
149 |
aaaatagcaattcccacttcaacagaaagtataccaatcttacaaaattgaaaattatatggtccatatgtagagtat |
226 |
Q |
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||||||| |||||||||||||||| ||| |||| ||| |||||||| || ||||| || |||||||||||||||||| |
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| T |
31890679 |
aaaatagaaattcccacttcaacaaaaactatagaaattttacaaaactggaaattctaaggtccatatgtagagtat |
31890602 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 31890831 - 31890787
Alignment:
| Q |
1 |
ttatccattctttttaacaatatatcttatcaaaaaagtaattga |
45 |
Q |
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| T |
31890831 |
ttatctattctttttaataatatgtcttatcagaaaagtaattga |
31890787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 148 - 217
Target Start/End: Original strand, 15601857 - 15601926
Alignment:
| Q |
148 |
caaaatagcaattcccacttcaacagaaagtataccaatcttacaaaattgaaaattatatggtccatat |
217 |
Q |
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| T |
15601857 |
caaaatagcaattcccacttcaacagaaagtatacaaatcttacaaaactgaaaattctaaggtccatat |
15601926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 148 - 217
Target Start/End: Original strand, 15633169 - 15633238
Alignment:
| Q |
148 |
caaaatagcaattcccacttcaacagaaagtataccaatcttacaaaattgaaaattatatggtccatat |
217 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||| |||||||| || ||||||||| |
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| T |
15633169 |
caaaatagcaattcccacttcaacagaaagtataaaaatcttacaaaactgaaaattctaaggtccatat |
15633238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 148 - 212
Target Start/End: Original strand, 10970591 - 10970655
Alignment:
| Q |
148 |
caaaatagcaattcccacttcaacagaaagtataccaatcttacaaaattgaaaattatatggtc |
212 |
Q |
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|
||||||||||||||||| ||||||||||||||||| | |||||||||| |||||||| ||||||| |
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| T |
10970591 |
caaaatagcaattcccagttcaacagaaagtatacaagtcttacaaaactgaaaattttatggtc |
10970655 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 15601673 - 15601718
Alignment:
| Q |
1 |
ttatccattcttttt-aacaatatatcttatcaaaaaagtaattga |
45 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||| |||||||| |
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|
| T |
15601673 |
ttatccattcttttttaataatatatcttatcaaaaatgtaattga |
15601718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 148 - 226
Target Start/End: Original strand, 41611228 - 41611306
Alignment:
| Q |
148 |
caaaatagcaattcccacttcaacagaaagtataccaatcttacaaaattgaaaattatatggtccatatgtagagtat |
226 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||| |||||||||||| |||||||| || ||||||| |||||||||| |
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| T |
41611228 |
caaaatagcaattcccacttcaacataaaccatacaaatcttacaaaagtgaaaattctaaggtccatctgtagagtat |
41611306 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 41611076 - 41611121
Alignment:
| Q |
1 |
ttatccattctttttaacaatatatcttatc-aaaaaagtaattga |
45 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
41611076 |
ttatccattctttttaataatatatcttatcaaaaaaagtaattga |
41611121 |
T |
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