View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5845_high_9 (Length: 341)
Name: NF5845_high_9
Description: NF5845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5845_high_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 96; Significance: 5e-47; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 215 - 322
Target Start/End: Complemental strand, 36573460 - 36573353
Alignment:
| Q |
215 |
aaaagagacgggatatattacgatgtcaaaagagacgagttatattacaatatccatcaagcaatgatcccataaccttgccgatttgatgaccggtttg |
314 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36573460 |
aaaagagacgggttatattacgatgtcaaaagagacgggttatattataatatccatcaagcaatgatcccataaccttgccgatttgatgaccggtttg |
36573361 |
T |
|
| Q |
315 |
gtttttaa |
322 |
Q |
| |
|
|||||||| |
|
|
| T |
36573360 |
gtttttaa |
36573353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 68 - 134
Target Start/End: Complemental strand, 36573608 - 36573542
Alignment:
| Q |
68 |
cctatattttattcccacatggattataattaaattaaaacaataaacaatgatatattttaactac |
134 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36573608 |
cctatattttattcccacatggattataattaaattaaaacaataaacaatgatatattttaactac |
36573542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 50
Target Start/End: Complemental strand, 36573675 - 36573647
Alignment:
| Q |
22 |
acatagtatgcccctttcaattttgcaat |
50 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
36573675 |
acatagtatgcccctttcaattttgcaat |
36573647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University