View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5845_low_12 (Length: 318)
Name: NF5845_low_12
Description: NF5845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5845_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 17 - 302
Target Start/End: Complemental strand, 42960684 - 42960399
Alignment:
| Q |
17 |
tatatggttaattaatgaatattacaagatgtcgcaactctttaaccattcaccgaacacaattaaccgcgatgctggaagtcattaaccatttaccgag |
116 |
Q |
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| T |
42960684 |
tatatggttaattaatgaatattacaagatgtcgcaactcattaaccatttaccgaacacaattaaccacgatgctggaagtcattaaccatttaccgag |
42960585 |
T |
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| Q |
117 |
cacaatcaacaaggcgtgcaatgtctatacgagcattgaatagtaaaatagaaactaacaagtaacatgcatagaagtgatttttcctttcatgataaac |
216 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||| |
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| T |
42960584 |
cacaatcaacaaggcgtgcaacgtctatacgagcattgaatagtaaaatagaaactaacaagtaatatgcatagaagtaatttttcatttcatgataaac |
42960485 |
T |
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| Q |
217 |
cagattgggcagctctcaacaatcccacctaaacaaagatcagcagaatccattaaagcttttgtgaagaacaaaaaagacattcc |
302 |
Q |
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| T |
42960484 |
cagattgggcagctctcaacaatcccacctaaacaaagatcagcagaatccattaaagcttttgtgaagaacaaaaaagacattcc |
42960399 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 29246463 - 29246407
Alignment:
| Q |
28 |
ttaatgaatattacaagatgtcgcaactctttaaccattcaccgaacacaattaacc |
84 |
Q |
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| T |
29246463 |
ttaatgaatataacaaggtgtcgcaactcattaaccatacactgaacataattaacc |
29246407 |
T |
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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 86
Target Start/End: Original strand, 8309504 - 8309561
Alignment:
| Q |
27 |
attaatgaatattacaagatgtcgcaactctttaaccattcaccgaacacaattaaccgc |
86 |
Q |
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| T |
8309504 |
attaatgaata--acaagatatcgcaactcactaaccattcaccgagcacaattaaccgc |
8309561 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 40829719 - 40829662
Alignment:
| Q |
27 |
attaatgaatattacaagatgtcgcaactctttaaccattcaccgaacacaattaacc |
84 |
Q |
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| T |
40829719 |
attaatgaatataacaaggtgtagcaactcattaaccatccactgagcacaattaacc |
40829662 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 20668350 - 20668294
Alignment:
| Q |
28 |
ttaatgaatattacaagatgtcgcaactctttaaccattcaccgaacacaattaacc |
84 |
Q |
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||||||||||| ||||| ||||||||||| ||||||||| | || ||||||||||| |
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| T |
20668350 |
ttaatgaatatgacaaggtgtcgcaactcattaaccatttaatgatcacaattaacc |
20668294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 52910150 - 52910094
Alignment:
| Q |
28 |
ttaatgaatattacaagatgtcgcaactctttaaccattcaccgaacacaattaacc |
84 |
Q |
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|||||||||||||||||||||| |||||| ||| |||| ||| ||| | |||||||| |
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| T |
52910150 |
ttaatgaatattacaagatgtcacaactccttatccatccacagaatataattaacc |
52910094 |
T |
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