View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5845_low_16 (Length: 272)
Name: NF5845_low_16
Description: NF5845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5845_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 44489637 - 44489374
Alignment:
| Q |
1 |
atggactaattactgtggctaattctaatttgactatagaaaatgatcttattagccaactctctaatgatagcaaactccacagtgtttcacttgatct |
100 |
Q |
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| T |
44489637 |
atggactaattaccgtggctaattctaatttgactatagaaaatgatcttattagccaactctctaatgatagcaaactctacagtgtttcacttgatct |
44489538 |
T |
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| Q |
101 |
attcacaaagggttgggtgcatgnnnnnnngaacaagacattatggaattctaccgggttgcatcctcgtttcaaaaacggtagattgcctatgaagatg |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44489537 |
attcacaaagggttgggtgcatgaaaaaaagaacaagacattatggaattctaccgggttgcatcctcgtttcaaaaacggtagattgcctatgaagatg |
44489438 |
T |
|
| Q |
201 |
tcaaatcgaaccagagtcatttaccattcttcaagaggcggaggagaaacccatgatgatgatg |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44489437 |
tcaaatcgaaccagagtcatttaccattcttcaagaggcggaggagaaacccatgatgatgatg |
44489374 |
T |
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