View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5845_low_17 (Length: 268)
Name: NF5845_low_17
Description: NF5845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5845_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 38999074 - 38998821
Alignment:
| Q |
1 |
taacattatctttagacacatctttggtatcagaatcaacaaatagttcgtcgatatcgtcggaagttattttgcttgatagaaagatatctgaagttat |
100 |
Q |
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| T |
38999074 |
taacattatctttagacacatctttggtatcagaatcaacaaatagttcgtcgatatcgtcggaagttattttgcttgatagaaagatatctgaagttat |
38998975 |
T |
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| Q |
101 |
gttggatccaattgagtattcaagaattgaatttcctgacataagtgttgttaaggagaatcaacaaatggtttctcaatacttcaatcttgcttgtgcc |
200 |
Q |
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| T |
38998974 |
gttggatccaattgagtattcaagaattgaatttcctgacataagtgttgttaaggagaatcaacaaatggtttctcaatacttcaatcttgcttgtgcc |
38998875 |
T |
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| Q |
201 |
tcaagtaataacaattcaagaaagttgctaccatttctccatcttggtgcttct |
254 |
Q |
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| T |
38998874 |
tcaagtaacaacaattcaagaaagttgctaccatttctccatcttggtgcttct |
38998821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 109 - 250
Target Start/End: Original strand, 32205166 - 32205310
Alignment:
| Q |
109 |
caattgagtattcaagaattgaatttcctgacataagtgttgttaaggagaatcaacaaatggtttctcaatacttcaatcttgcttgtgcctcaagtaa |
208 |
Q |
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||||||| || |||||||| ||||||||| | ||||||||| ||| ||| ||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
32205166 |
caattgaatactcaagaatcgaatttccttatataagtgtttttagtgagcatcaacaaatggtttctgaatatttcaatcttgcttgtgcctcaagtaa |
32205265 |
T |
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| Q |
209 |
taac---aattcaagaaagttgctaccatttctccatcttggtgc |
250 |
Q |
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| T |
32205266 |
caacaaaaattgaagaaagatactaccttttcttcatcttggtgc |
32205310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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