View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5845_low_18 (Length: 252)
Name: NF5845_low_18
Description: NF5845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5845_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 455193 - 454950
Alignment:
| Q |
1 |
aaaagagtcaactttttatcaatttcacatcataacgataagcaccatattcatattgagaagaaaaagaaaaaggaaacaaacccaattagtgaggtca |
100 |
Q |
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| T |
455193 |
aaaagagtcaactttttatcaatttcacatcataacgataagcaccat--tcatattgagaagaaaaagaaaaaggaaacaaacccaattagtgaggtca |
455096 |
T |
|
| Q |
101 |
tgaaaatccaggaaaaacttgttaaatttaaggaataagagcgagagtttctcttctcctgtgnnnnnnnggaatagaaacaataaattacttaatagac |
200 |
Q |
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| T |
455095 |
tgaaaatccaggaaaaacttgttaaatttaaggaataagagcgagagtt-----tctcctgtgaaaaaaaggaatagaaacaataaattacttaataaac |
455001 |
T |
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| Q |
201 |
tttagataagaggaaaggatagataaggtggtgatagtataatctacccag |
251 |
Q |
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| T |
455000 |
tttagataagaggaaaggatagataaggtggtgatagtaaaatatacccag |
454950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 75 - 153
Target Start/End: Complemental strand, 466828 - 466750
Alignment:
| Q |
75 |
ggaaacaaacccaattagtgaggtcatgaaaatccaggaaaaacttgttaaatttaaggaataagagcgagagtttctc |
153 |
Q |
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| T |
466828 |
ggaaacaaacccaattagtgaggtcatgaaaatcaaggaaaaactccttaaattcaaggaatatgagccagagtttctc |
466750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 153
Target Start/End: Complemental strand, 474295 - 474235
Alignment:
| Q |
93 |
tgaggtcatgaaaatccaggaaaaacttgttaaatttaaggaataagagcgagagtttctc |
153 |
Q |
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| T |
474295 |
tgaggtcatgaaaatcaaggaaaaactccttaaatttaaggaataagaggcagagtttctc |
474235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 153
Target Start/End: Complemental strand, 446101 - 446016
Alignment:
| Q |
68 |
agaaaaaggaaacaaacccaattagtgaggtcatgaaaatccaggaaaaacttgttaaatttaaggaataagagcgagagtttctc |
153 |
Q |
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| T |
446101 |
agaaaatgaaaacaaacctaattagtgaagtcatgaatatccaggaaaaactccttaagtttaaggagtaggaggcagagtttctc |
446016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 75 - 153
Target Start/End: Complemental strand, 479779 - 479701
Alignment:
| Q |
75 |
ggaaacaaacccaattagtgaggtcatgaaaatccaggaaaaacttgttaaatttaaggaataagagcgagagtttctc |
153 |
Q |
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| T |
479779 |
ggaaactaacccaattagtgaggttaagaataacaaagaaaaactccttaaatttaaggaataagagccagaatttctc |
479701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 27493542 - 27493602
Alignment:
| Q |
76 |
gaaacaaacccaattagtgaggtcatgaaaatccaggaaaaacttgttaaatttaaggaat |
136 |
Q |
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| T |
27493542 |
gaaacaaacccaactagtgaagtgatgaatatccaagaaaaactctttaaatttaaggaat |
27493602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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