View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5845_low_21 (Length: 250)
Name: NF5845_low_21
Description: NF5845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5845_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 45388572 - 45388334
Alignment:
| Q |
1 |
tagtctaaagatatctcatactgttaaaatatattggactgaccatgttatcatacgcagaaaattgttatattggccattttaattgttcttgtgcccc |
100 |
Q |
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| T |
45388572 |
tagtctaaa-atatctcatactgttaaaatatattggactgaccatgttatcatacgcagaaaattgttatattggccattttaattgttcttgtgcccc |
45388474 |
T |
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| Q |
101 |
ttaaaaacgtcatatctttctcggttcataatccctgaatctatcgggtggtaactccaactcgctgttgttcgggtgttatgacatcattcacctttat |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45388473 |
ttaaaaacgtcatatctctctcggttcataatccctgaatctatcgggtggtaactccaactcgctgttgttcgggtgttatgacatcattcacctttat |
45388374 |
T |
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| Q |
201 |
catatatcaaaaaacattacttgtactatatttcttcatc |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
45388373 |
catatatcaaaaaacattacttgtactatatttcttcatc |
45388334 |
T |
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