View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5845_low_26 (Length: 221)
Name: NF5845_low_26
Description: NF5845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5845_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 9e-97; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 23 - 205
Target Start/End: Original strand, 39143048 - 39143230
Alignment:
| Q |
23 |
tcgcagtatggtaatcaagataaagaaaaagatgatgctcctttgagtcgggactttgtgtcatcgaagacgaagaagcaatttgaagagcgggttaggg |
122 |
Q |
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| T |
39143048 |
tcgcagtatggtaatcaagataaagaaaaagatgatgctcctttgagtcgggactttgtgtcatcgaagatgaagaagcaatttgaagagcgggttaggg |
39143147 |
T |
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| Q |
123 |
atcttcagttaaaagagaaaaggtgtgcagaacgagcggtggagcttgaggccaaggagaagctctttgaaggccgtgtaaag |
205 |
Q |
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| T |
39143148 |
atcttcagttaaaagagaaaaggtgtgcagaacgagcggtggagcttgaggccaaggagaagctctttgaaggccgtgtaaag |
39143230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 94 - 204
Target Start/End: Original strand, 39129964 - 39130074
Alignment:
| Q |
94 |
gaagaagcaatttgaagagcgggttagggatcttcagttaaaagagaaaaggtgtgcagaacgagcggtggagcttgaggccaaggagaagctctttgaa |
193 |
Q |
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|||||||||||||||||||| ||||| || ||| ||||||||||||||||||| | ||||| || ||||||||||||| | |||||||||||||||||| |
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| T |
39129964 |
gaagaagcaatttgaagagcaggttaaagagcttgagttaaaagagaaaaggtgcggagaacaagtggtggagcttgagtcaaaggagaagctctttgaa |
39130063 |
T |
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| Q |
194 |
ggccgtgtaaa |
204 |
Q |
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| T |
39130064 |
ggccgtgtaaa |
39130074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 94 - 205
Target Start/End: Complemental strand, 39495134 - 39495023
Alignment:
| Q |
94 |
gaagaagcaatttgaagagcgggttagggatcttcagttaaaagagaaaaggtgtgcagaacgagcggtggagcttgaggccaaggagaagctctttgaa |
193 |
Q |
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| T |
39495134 |
gaagaagcaatttgatgcccaggttaaggagcttgagttaaaagagaaaaggtacatagaacgagcggtggagcttgagtcaaaggagaagctctttgaa |
39495035 |
T |
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| Q |
194 |
ggccgtgtaaag |
205 |
Q |
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| T |
39495034 |
ggtcgtgtaaag |
39495023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 94 - 196
Target Start/End: Complemental strand, 39427297 - 39427195
Alignment:
| Q |
94 |
gaagaagcaatttgaagagcgggttagggatcttcagttaaaagagaaaaggtgtgcagaacgagcggtggagcttgaggccaaggagaagctctttgaa |
193 |
Q |
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||||||||||||||||||| |||||| | ||| |||||||||||||||| || | |||| ||||||||| ||||||| | |||||||||| ||||||| |
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| T |
39427297 |
gaagaagcaatttgaagagagggttaagaggcttgagttaaaagagaaaagatgcgaagaaagagcggtggtgcttgagtcaaaggagaagcactttgaa |
39427198 |
T |
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| Q |
194 |
ggc |
196 |
Q |
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||| |
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| T |
39427197 |
ggc |
39427195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 92 - 204
Target Start/End: Original strand, 39124001 - 39124113
Alignment:
| Q |
92 |
acgaagaagcaatttgaagagcgggttagggatcttcagttaaaagagaaaaggtgtgcagaacgagcggtggagcttgaggccaaggagaagctctttg |
191 |
Q |
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||||| |||||||||||||||| ||||| ||| || |||||||||||||||| || ||||||| ||||||||| ||| | ||||||||||||||| |
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| T |
39124001 |
acgaataagcaatttgaagagcaggttatggagattaagttaaaagagaaaagctgcagagaacgaatggtggagctcgagtcaaaggagaagctcttta |
39124100 |
T |
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| Q |
192 |
aaggccgtgtaaa |
204 |
Q |
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||||| ||||||| |
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| T |
39124101 |
aaggctgtgtaaa |
39124113 |
T |
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