View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5845_low_27 (Length: 217)
Name: NF5845_low_27
Description: NF5845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5845_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 1e-92; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 19 - 202
Target Start/End: Complemental strand, 8719058 - 8718876
Alignment:
| Q |
19 |
ggcaagagaagacaaacttgaggtgattttaatattccctttttgtcttcctttcttttgatgtgaatttcaaactaagaaagttgaaaaggagaacata |
118 |
Q |
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| T |
8719058 |
ggcaagagaagacaaacttgaggtgattttaatattcc-tttttgtcttcctttcttttgatgtgaatttcaaactaagaaagttgaaaaggagaacata |
8718960 |
T |
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| Q |
119 |
attgtagacaactttgcttaatatttgtgtttatttacgaaacaggtaaaaaagatgataatccatgctgttgaccaagttgtt |
202 |
Q |
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| T |
8718959 |
attgtagacaactttgcttaatatttgtgtttatttatgaaacaggtaaaaaagatgataatccatgctgttgaccaagttgtt |
8718876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 8672761 - 8672644
Alignment:
| Q |
19 |
ggcaagagaagacaaacttgaggtgattttaatattccctttttgtcttcctttcttttgatgtgaatttcaaactaagaaagttgaaaaggagaacata |
118 |
Q |
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| T |
8672761 |
ggcaagagaagacaaacttgaggtgattttaatattcc-tttttgtcttcctttcttttgatgtgaatttcaaactaagaaagttgaaaaggagaacata |
8672663 |
T |
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| Q |
119 |
attgtagacaactttgctt |
137 |
Q |
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| T |
8672662 |
attgtagataactttgctt |
8672644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 17 - 155
Target Start/End: Complemental strand, 8591222 - 8591082
Alignment:
| Q |
17 |
agggcaagagaagacaaacttgaggtgattttaatattccctttttgtcttcctttcttttgatgtgaatttcaaactaagaaagttgaaaaggagaaca |
116 |
Q |
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| T |
8591222 |
agggcaagagaagacaaacttgaggtgattttaataatcc-tttttgccttcctttcttttgatgtgaatttcaaactaagaaagttgaaaaggagaaca |
8591124 |
T |
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| Q |
117 |
taattgtagacaac---tttgcttaatatttgtgtttattta |
155 |
Q |
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| T |
8591123 |
taattgtggacaactaatttgctttgtttttgtgtttattta |
8591082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 8591052 - 8591007
Alignment:
| Q |
159 |
aacaggtaaaaaagatgataatccatgctgttgaccaagttgttga |
204 |
Q |
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| T |
8591052 |
aacagttaaaaaatatgataatctatgctgctgaccaagttgttga |
8591007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 157 - 202
Target Start/End: Original strand, 23439993 - 23440038
Alignment:
| Q |
157 |
gaaacaggtaaaaaagatgataatccatgctgttgaccaagttgtt |
202 |
Q |
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| T |
23439993 |
gaaacaggtaaaaaagatgataatccatgttgttgaccaagttgtt |
23440038 |
T |
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