View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5845_low_28 (Length: 206)
Name: NF5845_low_28
Description: NF5845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5845_low_28 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 183; Significance: 3e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 3e-99
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 37984372 - 37984562
Alignment:
| Q |
1 |
cctgctgacactgatctcatcgatcgcgctctcaaaatgggatctctacttcttgatgctgccaaacactcctctcgcaaacgcgcttataatcataatt |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37984372 |
cctgctgatactgatctcatcgatcgcgctctcaaaatgggatctctacttcttgatgctgccaaacactcctctcgcaaacgcgcttataatcataatt |
37984471 |
T |
|
| Q |
101 |
caattgtttggcctcttcctcctgacctcaccttcaaggttctctcagattctcgcaattttcaatcctacgctacctttactttttatcc |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
37984472 |
caattgtttggcctcttcctcctgacctcaccttcaaggttctctcagattctcgcacttttcaatcctacgctacctttactttttatcc |
37984562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University