View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5845_low_4 (Length: 530)
Name: NF5845_low_4
Description: NF5845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5845_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 296
Target Start/End: Complemental strand, 51941834 - 51941551
Alignment:
| Q |
19 |
atagaggagccttaggagttaagacttgattttataatattgttacaatcttttgttctatataaaaaataaatcttgcgttataatagggttttttcaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
51941834 |
atagaggagccttaggagttaagacttgattttataatattgttacaatcttttgttctatatacaaaataaatcttgcgttataatagggttttttcaa |
51941735 |
T |
|
| Q |
119 |
atcaaacattgatttttcttaaaaataa--------ataaatttatattcatgtggtttaaaaaactaaatcaataagaggttagtttagtaaaagaaaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
51941734 |
atcaaacattgatttttcttaaaaataaacaaatttataattttatattcatgtggtttaaaaaattaaatcaataagaggttagtttagtaaaagaaaa |
51941635 |
T |
|
| Q |
211 |
aagagtgatgataggtaaacacacataggtggcataccatcttatacacactcaaaaataatattaaatattcatacaaagtgcca |
296 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
51941634 |
aagagtgatgataggtaaacacacacaggtggcataccatcttatacaca--caaaaataatattaaatattcatacaaagtgcca |
51941551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 331 - 484
Target Start/End: Complemental strand, 51941523 - 51941370
Alignment:
| Q |
331 |
gtttcaatctcattctcagttctatcccatcctccctttctcttttctaagtctgtttcattccctctcttgctgccttctctatacgtctcttccgatg |
430 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51941523 |
gtttcaatctcattcccaattctatcccatcctccctttctcttttctaagtctgtttcattccctctcttgctgccttctctatacgtctcttccgatg |
51941424 |
T |
|
| Q |
431 |
accgtccaccgtaccaacggcgataacaccactgactatcaattattctcctcc |
484 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
51941423 |
accgtccaccgtaccggcggcgataacaccattgactgtcaattattctcctcc |
51941370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 213 - 293
Target Start/End: Original strand, 44569364 - 44569445
Alignment:
| Q |
213 |
gagtgatgataggtaaacacacataggtggcataccatcttatacacac-tcaaaaataatattaaatattcatacaaagtg |
293 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||| | ||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
44569364 |
gagtgatgataggtatacatacataggtggcatattaccttatacacacttcaaaaataatattaaatactcatacaaagtg |
44569445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 344 - 520
Target Start/End: Original strand, 44569464 - 44569635
Alignment:
| Q |
344 |
tctcagttctatcccatcctccctttctcttttctaagtctgtttcattccctctcttgctgccttctctatacgtctctt-ccgatgaccgtccaccgt |
442 |
Q |
| |
|
|||||||||| || |||||||||||||||| ||| | |||| ||||||||||| |||||| |||||| || |||||| ||| | ||||||||||| |
|
|
| T |
44569464 |
tctcagttctctctcatcctccctttctctcttccacgtct-----attccctctctagctgccatctctacacatctctttccggttaccgtccaccgg |
44569558 |
T |
|
| Q |
443 |
accaacggcgataacaccactgactatcaattattctcctcccttcatcaccgaccactactgtcctctaccttcatc |
520 |
Q |
| |
|
|| |||||| ||| ||| |||| ||||| |||||||||||||||||||||||||| || ||||||| ||| |||| |
|
|
| T |
44569559 |
acgg-cggcgacaaccccattgaccgtcaatcattctcctcccttcatcaccgaccaccaccgtcctcttcctccatc |
44569635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 8004867 - 8004819
Alignment:
| Q |
201 |
taaaagaaaaaagagtgatgataggtaaacacacataggtggcatacca |
249 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
8004867 |
taaaaaaaaaaagagtgatgataggtaaacacccataggtggcatacca |
8004819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 210 - 249
Target Start/End: Complemental strand, 5197652 - 5197613
Alignment:
| Q |
210 |
aaagagtgatgataggtaaacacacataggtggcatacca |
249 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5197652 |
aaagagtgatgataggtaaacactcataggtggcatacca |
5197613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 271
Target Start/End: Original strand, 15027827 - 15027884
Alignment:
| Q |
216 |
tgatgataggtaaacacacataggtggcataccatcttat--acacactcaaaaataa |
271 |
Q |
| |
|
||||||||| ||||||||||||||||||||| || ||||| |||||||||||||||| |
|
|
| T |
15027827 |
tgatgatagataaacacacataggtggcatatcaccttatacacacactcaaaaataa |
15027884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 249
Target Start/End: Complemental strand, 1176667 - 1176632
Alignment:
| Q |
214 |
agtgatgataggtaaacacacataggtggcatacca |
249 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1176667 |
agtgatgataggtaaacacccataggtggcatacca |
1176632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University