View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5845_low_5 (Length: 513)
Name: NF5845_low_5
Description: NF5845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5845_low_5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 1 - 513
Target Start/End: Original strand, 38999123 - 38999635
Alignment:
| Q |
1 |
tatagtcttgagttacttttccttttccaacaatttgtgaaattggaaccaaagcaaaccctaaaagttggtcctccatgtgaattcttgctctactaaa |
100 |
Q |
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| T |
38999123 |
tatagtcttgagttacttttccttttccaacaatttgtgaaattggaaccaaagcaaaccctaaaagttgatcctccatgtgaattcttgctctactaaa |
38999222 |
T |
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| Q |
101 |
catccaaatttcacatttcataacagcatctatttgagttatcttcatcctcaagttttcattgaatgttggattttttccacctccattgattattctt |
200 |
Q |
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| T |
38999223 |
catccaaatttcacatttcataacagcatctatttgagttatcttcatcctcaagttttcattgaatgttggattttttccacctccattgattattctt |
38999322 |
T |
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| Q |
201 |
gtagaaagagtttcatcagggttgtaagtaagggagaatttagcatatacatcttgattatcatagatgcaaatgttatgaatgtttctagcatgatgaa |
300 |
Q |
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| T |
38999323 |
gtagaaagagtttcatcagggttgtaagtaagggagaatttagcatatacatcttgattatcatagatgcaaatgttatgaatgtttctagcatgatgaa |
38999422 |
T |
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| Q |
301 |
catagacatcaagaagacctgtgaactctgcttcatcttcatcatctaattgggtagctctattcaaatttggattgtacctaacgttgttgttttgatg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
38999423 |
catagacatcaagaagacctgtgaactctgcttcatcttcatcatctaattgggtagctctattcaaatttggattgtacctaaagttgttgttttgatg |
38999522 |
T |
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| Q |
401 |
actctgattgaatgaatccattctaatcaatgtttttgccttgtatgtctgttcatcaatgttgaaccattaatttatccaattccttctccctttggca |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| | |||||||| | |
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| T |
38999523 |
actctgattgaatgaatccattctaatcaatgtttttgccttgaatgtctgttcatcaatgttgaaccattaaattatccaattcctgcaccctttggga |
38999622 |
T |
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| Q |
501 |
ctcataaatgaca |
513 |
Q |
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| T |
38999623 |
cacataaatgaca |
38999635 |
T |
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