View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5845_low_9 (Length: 354)

Name: NF5845_low_9
Description: NF5845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5845_low_9
NF5845_low_9
[»] chr2 (16 HSPs)
chr2 (1-315)||(39215682-39215996)
chr2 (40-252)||(39192220-39192436)
chr2 (40-309)||(39197844-39198116)
chr2 (40-309)||(39161931-39162200)
chr2 (40-309)||(39206994-39207263)
chr2 (40-142)||(39222932-39223037)
chr2 (73-215)||(39370254-39370399)
chr2 (40-309)||(39388817-39389091)
chr2 (69-206)||(39381275-39381412)
chr2 (69-114)||(39421688-39421733)
chr2 (69-106)||(39468448-39468485)
chr2 (148-201)||(39223101-39223154)
chr2 (280-309)||(39468634-39468663)
chr2 (280-309)||(39478833-39478862)
chr2 (279-307)||(39381166-39381194)
chr2 (62-106)||(39459387-39459431)
[»] chr5 (2 HSPs)
chr5 (69-309)||(33561135-33561380)
chr5 (74-114)||(17059602-17059642)
[»] chr7 (1 HSPs)
chr7 (70-166)||(19807963-19808059)
[»] chr6 (1 HSPs)
chr6 (69-106)||(16113441-16113478)
[»] chr8 (1 HSPs)
chr8 (85-200)||(45342187-45342305)


Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 39215682 - 39215996
Alignment:
Q  1 aaagttgaaaaaattcgatttacgaccgacgaagcttgggtcaaggaaaaaatatattgaagaaacacaatcgggtaaatgttcttattcatctagttta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215682 aaagttgaaaaaattcgatttacgaccgacgaagcttgggtcaaggaaaaaatatattgaagaaacacaatcgggtaaatgttcttattcatctagttta 39215781  T
Q  101 ttgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215782 ttgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgt 39215881  T
Q  201 tttatgtctttgtcatattgaaattttgtctagttttcatatcacacccacacattgtcaaacaaatttgtatggtatatttcacccttgaacattttat 300  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215882 tttatgtctttgtcatattgaaattttttctagttttcatatcacacccacacattgtcaaacaaatttgtatggtatatttcacccttgaacattttat 39215981  T
Q  301 gaatctctttactgc 315  Q
    |||||||||||||||    
T  39215982 gaatctctttactgc 39215996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 40 - 252
Target Start/End: Complemental strand, 39192436 - 39192220
Alignment:
Q  40 gtcaaggaaaaaatatattgaaga---aacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatga 136  Q
    |||||||||||| |||||||| ||   || | |||| ||||||||| |||||||||||  |||||||| ||| ||||| | ||||  |||||||||||||    
T  39192436 gtcaaggaaaaagtatattgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgacagaatttcattgcaactattcctcttaatga 39192337  T
Q  137 tgatgacaatttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgttttatgtctttgtcatattg-aaattttgtctagtt 235  Q
    |||||| | ||||||||||  ||||||| || || |||||||| ||||||||||||||||||||| ||||| || ||||  ||| |||  || || ||||    
T  39192336 tgatgatattttttataacatgatctacttaattctttaaaaacatttttaatcatgttaatgttctatgtattagtcaatttgaaaagattttccagtt 39192237  T
Q  236 ttcatatcacacccaca 252  Q
    ||||||||||| |||||    
T  39192236 ttcatatcacatccaca 39192220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 40 - 309
Target Start/End: Complemental strand, 39198116 - 39197844
Alignment:
Q  40 gtcaaggaaaaaatatattgaaga---aacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatga 136  Q
    |||||||||||| |||||||| ||   || | |||| ||||||||| |||||||||||  |||||||| ||| ||||| | ||||  |||||||||||||    
T  39198116 gtcaaggaaaaagtatattgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgacagaatttcattgcaactattcctcttaatga 39198017  T
Q  137 tgatgacaatttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgttttatgtctttgtcatattg-aaattttgtctagtt 235  Q
    |||||| | ||||||||||  ||||||| || || |||||||| ||||||||||||||||||||| ||||| || ||||  ||| |||  || ||  |||    
T  39198016 tgatgatattttttataacatgatctacttaattctttaaaaacatttttaatcatgttaatgttctatgtattagtcaatttgaaaagattttcccgtt 39197917  T
Q  236 ttcatatcacacccacacattgtcaaacaaatttgtatggtatatt-tcacccttgaacattttatgaatctctt 309  Q
    ||||| ||||| ||||| | |||||||| |||||  ||  ||| || ||||||||||||||| |||| |||||||    
T  39197916 ttcatttcacatccacagactgtcaaactaatttcgat--tatcttgtcacccttgaacattatatgtatctctt 39197844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 40 - 309
Target Start/End: Original strand, 39161931 - 39162200
Alignment:
Q  40 gtcaaggaaaaaatatattgaaga---aacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatga 136  Q
    ||||||||||||||||||||| ||   || | |||| ||||||||||||| ||||||||| ||||||||||| ||| | || ||| |||||| |||||||    
T  39161931 gtcaaggaaaaaatatattgatgaggaaaaagaatccggtaaatgttcttcttcatctagattattgaaagaattttattataactgttccttttaatga 39162030  T
Q  137 tgatgacaatttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgttttatgtctttgtcatattgaaattttgtctagttt 236  Q
    |||||| | |||||  | || ||||||| || || |||||| |  |||||| ||||||||||||| |||||||| ||||| |  |||  || || || ||    
T  39162031 tgatgatattttttgaatcctgatctacttaattttttaaacacgtttttactcatgttaatgttgtatgtcttagtcatttgaaaagcttttccagatt 39162130  T
Q  237 tcatatcacacccacacattgtcaaacaaatttgtatggtatatttcacccttgaacattttatgaatctctt 309  Q
    |||||||||||||| ||  | |||||||||| || ||  ||| ||| |||||||||| ||||||| |||||||    
T  39162131 tcatatcacacccagac--tttcaaacaaatctgaattatat-ttttacccttgaactttttatgtatctctt 39162200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 40 - 309
Target Start/End: Complemental strand, 39207263 - 39206994
Alignment:
Q  40 gtcaaggaaaaaatatattgaaga---aacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatga 136  Q
    ||||||||||||||||||||| ||   || | |||| ||||||||||||| ||||||||| ||||||||||| ||| | || ||| |||||| |||||||    
T  39207263 gtcaaggaaaaaatatattgatgaggaaaaagaatccggtaaatgttcttcttcatctagattattgaaagaattttattataactgttccttttaatga 39207164  T
Q  137 tgatgacaatttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgttttatgtctttgtcatattgaaattttgtctagttt 236  Q
    |||||| | |||||  | || ||||||| || || |||||| |  |||||| ||||||||||||| |||||||| ||||| |  |||  || || || ||    
T  39207163 tgatgatattttttgaatcctgatctacttaattttttaaacacgtttttactcatgttaatgttgtatgtcttagtcatttgaaaagcttttccagatt 39207064  T
Q  237 tcatatcacacccacacattgtcaaacaaatttgtatggtatatttcacccttgaacattttatgaatctctt 309  Q
    |||||||||||||| ||  | |||||||||| || ||  ||| ||| |||||||||| ||||||| |||||||    
T  39207063 tcatatcacacccagac--tttcaaacaaatctgaattatat-ttttacccttgaactttttatgtatctctt 39206994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 40 - 142
Target Start/End: Original strand, 39222932 - 39223037
Alignment:
Q  40 gtcaaggaaaaaatatattga---agaaacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatga 136  Q
    |||||||||||||||||||||   ||||| | |||||||||||||||||||||||||| ||||||||||| | ||||  |||||| ||||||||||||||    
T  39222932 gtcaaggaaaaaatatattgatggagaaaaagaatcgggtaaatgttcttattcatcttgtttattgaaaaaatttctttacaactgttcctcttaatga 39223031  T
Q  137 tgatga 142  Q
    ||||||    
T  39223032 tgatga 39223037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 73 - 215
Target Start/End: Original strand, 39370254 - 39370399
Alignment:
Q  73 gggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctctta---atgatgatgacaatttttataacccgatctacatagt 169  Q
    ||||||||||||||||||||||||||||||||   | ||||| || ||  ||||| ||||   |||||||||| | |||||||||||||||||| |||||    
T  39370254 gggtaaatgttcttattcatctagtttattgatttaatttcattataattgttccacttaatgatgatgatgatattttttataacccgatctatatagt 39370353  T
Q  170 tgtttaaaaatatttttaatcatgttaatgttttatgtctttgtca 215  Q
    | | |||||| ||| ||||||||||||||||| |||||||| ||||    
T  39370354 tctataaaaacattcttaatcatgttaatgttgtatgtcttggtca 39370399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 40 - 309
Target Start/End: Complemental strand, 39389091 - 39388817
Alignment:
Q  40 gtcaaggaaaaaatatattgaag---aaacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatga 136  Q
    |||||||||||||||| |||| |   ||| | |||| |||||||||||||||||||| |||||||||||||| |||   |||||| ||||||||||||||    
T  39389091 gtcaaggaaaaaatattttgatggggaaaaagaatccggtaaatgttcttattcatccagtttattgaaagaatttttttacaactgttcctcttaatga 39388992  T
Q  137 tgatgaca--atttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgttttatgtctttgtcatattgaaat-tttgtctag 233  Q
    |||||| |   |||||||| |  ||||||| || ||   || |||  |||||||||||||||||||| |||||| | ||||  |||||||  || || ||    
T  39388991 tgatgatattttttttatagcttgatctacttaattccatagaaacgtttttaatcatgttaatgttgtatgtcatagtcaatttgaaatgcttttccag 39388892  T
Q  234 ttttcatatcacacccacacattgtcaaacaaatttgtatggtatat-ttcacccttgaacattttatgaatctctt 309  Q
     |||||||||||||||| | | | || ||| |||||| |   |||||  |||||||||||||||||||| |||||||    
T  39388891 atttcatatcacacccaaagactttcgaactaatttgca--atatatcctcacccttgaacattttatgtatctctt 39388817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 69 - 206
Target Start/End: Complemental strand, 39381412 - 39381275
Alignment:
Q  69 aatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatag 168  Q
    |||| ||||||||||||||||||| ||||||| ||||||| ||||| | ||   ||| || ||||||||| ||| | ||||  ||||  ||||||||||     
T  39381412 aatctggtaaatgttcttattcatatagtttactgaaagaatttcatttcagttgtttcttttaatgatgttgatacttttattaacttgatctacataa 39381313  T
Q  169 ttgtttaaaaatatttttaatcatgttaatgttttatg 206  Q
    ||  |||||||||||||||||| |||||||||| ||||    
T  39381312 ttcattaaaaatatttttaatcgtgttaatgttgtatg 39381275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 114
Target Start/End: Complemental strand, 39421733 - 39421688
Alignment:
Q  69 aatcgggtaaatgttcttattcatctagtttattgaaagagtttca 114  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||    
T  39421733 aatctggtaaatgttcttattcatctaatttattgaaagagtttca 39421688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 39468448 - 39468485
Alignment:
Q  69 aatcgggtaaatgttcttattcatctagtttattgaaa 106  Q
    |||| |||||||||||||||||||||||||||||||||    
T  39468448 aatctggtaaatgttcttattcatctagtttattgaaa 39468485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 201
Target Start/End: Original strand, 39223101 - 39223154
Alignment:
Q  148 tttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgtt 201  Q
    |||| |||| ||||||| || || ||||| ||||||||||||||||||||||||    
T  39223101 tttacaacctgatctacttaattctttaagaatatttttaatcatgttaatgtt 39223154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 309
Target Start/End: Original strand, 39468634 - 39468663
Alignment:
Q  280 tttcacccttgaacattttatgaatctctt 309  Q
    ||||||||||||||||||||||||||||||    
T  39468634 tttcacccttgaacattttatgaatctctt 39468663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 309
Target Start/End: Complemental strand, 39478862 - 39478833
Alignment:
Q  280 tttcacccttgaacattttatgaatctctt 309  Q
    ||||||||||||||||||||||||||||||    
T  39478862 tttcacccttgaacattttatgaatctctt 39478833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 307
Target Start/End: Complemental strand, 39381194 - 39381166
Alignment:
Q  279 atttcacccttgaacattttatgaatctc 307  Q
    |||||||||||||||||||||||||||||    
T  39381194 atttcacccttgaacattttatgaatctc 39381166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 39459387 - 39459431
Alignment:
Q  62 gaaacacaatcgggtaaatgttcttattcatctagtttattgaaa 106  Q
    |||||| |||||||||| ||||||||||||| ||| |||||||||    
T  39459387 gaaacagaatcgggtaagtgttcttattcatttagcttattgaaa 39459431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 69 - 309
Target Start/End: Original strand, 33561135 - 33561380
Alignment:
Q  69 aatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaattt----ttataacccgatctac 164  Q
    |||| ||||||||||||| ||||||||||||||||||||| ||| | || ||  |||||||| | |||||||||  ||||    ||||| || |||||||    
T  33561135 aatccggtaaatgttcttcttcatctagtttattgaaagaattttattataagtgttcctctcagtgatgatgatgattttttgttatatcctgatctac 33561234  T
Q  165 atagttgtttaaaaatatttttaatcatgttaatgttt-tatgtctttgtcatattgaaa--ttttgtctagttttcatatcacacccacacattgtcaa 261  Q
     || |  |||||| | |||||||||||||||||||||| |||||||| ||||  ||||||   |||  || | |||||||||||||||||| | | |||     
T  33561235 ttaatcctttaaacacatttttaatcatgttaatgtttgtatgtcttggtcaatttgaaaagcttttact-gatttcatatcacacccacagactttcag 33561333  T
Q  262 acaaatttgtatggtatatttcacccttgaacattttatgaatctctt 309  Q
    || ||| || ||  ||| |||||||||||||||||||||| |||||||    
T  33561334 actaatctggattatat-tttcacccttgaacattttatgtatctctt 33561380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 17059602 - 17059642
Alignment:
Q  74 ggtaaatgttcttattcatctagtttattgaaagagtttca 114  Q
    |||||||||| |||||||||||||||||| ||||| |||||    
T  17059602 ggtaaatgttgttattcatctagtttattaaaagaatttca 17059642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 70 - 166
Target Start/End: Original strand, 19807963 - 19808059
Alignment:
Q  70 atcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacat 166  Q
    |||||||||| ||||||||||||||||||||| ||| |||||||| | || | ||| || || |||||| ||| | |||| |||||| |||||||||    
T  19807963 atcgggtaaaagttcttattcatctagtttatagaaggagtttcatttcagctgtttctttttatgatgttgatatttttaataacctgatctacat 19808059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 16113441 - 16113478
Alignment:
Q  69 aatcgggtaaatgttcttattcatctagtttattgaaa 106  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  16113441 aatcgggtaagtgttctcattcatctagtttattgaaa 16113478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 200
Target Start/End: Original strand, 45342187 - 45342305
Alignment:
Q  85 ttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttgtttaaaa---ata 181  Q
    |||||||||||||||||||||||| ||||| | ||||  || || ||  ||||| ||| | |||| |||||| |||||||||| |  |||||||   |||    
T  45342187 ttattcatctagtttattgaaagaatttcatttcaactatttcttttgttgatgttgatatttttaataacctgatctacatattcttttaaaaaatata 45342286  T
Q  182 tttttaatcatgttaatgt 200  Q
    | |||||| ||||||||||    
T  45342287 tgtttaatgatgttaatgt 45342305  T

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