View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5846-Insertion-1 (Length: 171)
Name: NF5846-Insertion-1
Description: NF5846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5846-Insertion-1 |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 9e-81; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 9e-81
Query Start/End: Original strand, 9 - 168
Target Start/End: Complemental strand, 38816932 - 38816773
Alignment:
| Q |
9 |
caacagagagtcgctgcaggttaaaaatagttgggttttacaattcaattaatgtaatatggtatattgtttgtatcattgcttgaattgaagcaataat |
108 |
Q |
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| T |
38816932 |
caacagagagtcgctgcaggttaaaaatagttgggttttacaattcaattaatgtaatatggtatattgtttgtatcattgtttgaattgaagcaataat |
38816833 |
T |
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| Q |
109 |
ttgagaaaatagaataattgaacggtaaccatatactatgaagcacgaatacggactccg |
168 |
Q |
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| T |
38816832 |
ttgagaaaatagaataattgaacggtaaccatatactatgaagcactaatacggactccg |
38816773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 28; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 103 - 130
Target Start/End: Original strand, 9483393 - 9483420
Alignment:
| Q |
103 |
aataatttgagaaaatagaataattgaa |
130 |
Q |
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| T |
9483393 |
aataatttgagaaaatagaataattgaa |
9483420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 28; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 103 - 130
Target Start/End: Complemental strand, 32694808 - 32694781
Alignment:
| Q |
103 |
aataatttgagaaaatagaataattgaa |
130 |
Q |
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| T |
32694808 |
aataatttgagaaaatagaataattgaa |
32694781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 28; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 102 - 129
Target Start/End: Original strand, 8178369 - 8178396
Alignment:
| Q |
102 |
caataatttgagaaaatagaataattga |
129 |
Q |
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| T |
8178369 |
caataatttgagaaaatagaataattga |
8178396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 28; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 103 - 130
Target Start/End: Original strand, 41508545 - 41508572
Alignment:
| Q |
103 |
aataatttgagaaaatagaataattgaa |
130 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
41508545 |
aataatttgagaaaatagaataattgaa |
41508572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 28; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 103 - 130
Target Start/End: Complemental strand, 44247670 - 44247643
Alignment:
| Q |
103 |
aataatttgagaaaatagaataattgaa |
130 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
44247670 |
aataatttgagaaaatagaataattgaa |
44247643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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