View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5846_low_1 (Length: 230)

Name: NF5846_low_1
Description: NF5846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5846_low_1
NF5846_low_1
[»] chr3 (6 HSPs)
chr3 (24-214)||(53065740-53065930)
chr3 (31-214)||(53331401-53331584)
chr3 (31-214)||(53335085-53335268)
chr3 (31-214)||(53338762-53338945)
chr3 (97-214)||(53356799-53356916)
chr3 (24-75)||(53072870-53072921)


Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 24 - 214
Target Start/End: Complemental strand, 53065930 - 53065740
Alignment:
Q  24 gctgtgtttgcatttgatcaaataacctcagcttatggttgtttcttctcttgtttcatatggaataataaacagtctataacaagatgaaagatataga 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  53065930 gctgtgtttgcatttgatcaaataacctcagcttatggttgtttcttctcttgtttcatatggaataataaacagtctataacaagctgaaagatataga 53065831  T
Q  124 tacaatagacctcaagtggagtccaattctacctgatgaggcaagtttttctcttaaagtttcataaatttagtttctatgtgcatatttt 214  Q
    ||||||||||||||||||| |||||||| |||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  53065830 tacaatagacctcaagtggtgtccaattatacccgataaggcaagtttttctcttaaactttcataaatttagtttctatgtgcatatttt 53065740  T

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Target: chr3; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 31 - 214
Target Start/End: Original strand, 53331401 - 53331584
Alignment:
Q  31 ttgcatttgatcaaataacctcagcttatggttgtttcttctcttgtttcatatggaataataaacagtctataacaagatgaaagatatagatacaata 130  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  53331401 ttgcatttggtcaaataacctcagcttatggttgtttattctcttgtttcatatggaataataaacagtctataacaagctgaaagatatagatacaata 53331500  T
Q  131 gacctcaagtggagtccaattctacctgatgaggcaagtttttctcttaaagtttcataaatttagtttctatgtgcatatttt 214  Q
    |||||||||||| |||||||| |||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  53331501 gacctcaagtggtgtccaattatacccgataaggcaagtttttctcttaaactttcataaatttagtttctatgtgcatatttt 53331584  T

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Target: chr3; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 31 - 214
Target Start/End: Original strand, 53335085 - 53335268
Alignment:
Q  31 ttgcatttgatcaaataacctcagcttatggttgtttcttctcttgtttcatatggaataataaacagtctataacaagatgaaagatatagatacaata 130  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  53335085 ttgcatttggtcaaataacctcagcttatggttgtttattctcttgtttcatatggaataataaacagtctataacaagctgaaagatatagatacaata 53335184  T
Q  131 gacctcaagtggagtccaattctacctgatgaggcaagtttttctcttaaagtttcataaatttagtttctatgtgcatatttt 214  Q
    |||||||||||| |||||||| |||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  53335185 gacctcaagtggtgtccaattatacccgataaggcaagtttttctcttaaactttcataaatttagtttctatgtgcatatttt 53335268  T

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Target: chr3; HSP #4
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 31 - 214
Target Start/End: Original strand, 53338762 - 53338945
Alignment:
Q  31 ttgcatttgatcaaataacctcagcttatggttgtttcttctcttgtttcatatggaataataaacagtctataacaagatgaaagatatagatacaata 130  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  53338762 ttgcatttggtcaaataacctcagcttatggttgtttattctcttgtttcatatggaataataaacagtctataacaagctgaaagatatagatacaata 53338861  T
Q  131 gacctcaagtggagtccaattctacctgatgaggcaagtttttctcttaaagtttcataaatttagtttctatgtgcatatttt 214  Q
    |||||||||||| |||||||| |||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  53338862 gacctcaagtggtgtccaattatacccgataaggcaagtttttctcttaaactttcataaatttagtttctatgtgcatatttt 53338945  T

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Target: chr3; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 97 - 214
Target Start/End: Original strand, 53356799 - 53356916
Alignment:
Q  97 agtctataacaagatgaaagatatagatacaatagacctcaagtggagtccaattctacctgatgaggcaagtttttctcttaaagtttcataaatttag 196  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||| |||||||| |||| ||| |||||||||||||||||||| |||||| |||||||    
T  53356799 agtctataataagctgaaagatatagatacaatagacctcaagtggtgtccaattatacccgataaggcaagtttttctcttaaactttcatgaatttag 53356898  T
Q  197 tttctatgtgcatatttt 214  Q
    ||||||||||||||||||    
T  53356899 tttctatgtgcatatttt 53356916  T

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Target: chr3; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 53072921 - 53072870
Alignment:
Q  24 gctgtgtttgcatttgatcaaataacctcagcttatggttgtttcttctctt 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53072921 gctgtgtttgcatttgatcaaataacctcagcttatggttgtttcttctctt 53072870  T

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