View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5848-Insertion-1 (Length: 1059)

Name: NF5848-Insertion-1
Description: NF5848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5848-Insertion-1
NF5848-Insertion-1
[»] chr6 (32 HSPs)
chr6 (9-671)||(26847942-26848605)
chr6 (442-551)||(27666597-27666706)
chr6 (373-440)||(27668832-27668899)
chr6 (323-374)||(26811169-26811220)
chr6 (584-644)||(27669598-27669658)
chr6 (324-374)||(26861117-26861167)
chr6 (9-73)||(26949542-26949606)
chr6 (373-429)||(26660834-26660892)
chr6 (373-429)||(26766805-26766863)
chr6 (10-73)||(26959046-26959109)
chr6 (323-374)||(26974611-26974662)
chr6 (323-374)||(27310311-27310362)
chr6 (9-73)||(25071540-25071604)
chr6 (9-77)||(27214294-27214362)
chr6 (9-77)||(27234866-27234934)
chr6 (323-378)||(26616962-26617017)
chr6 (326-373)||(26635248-26635295)
chr6 (10-73)||(26635571-26635634)
chr6 (323-378)||(26722890-26722945)
chr6 (326-373)||(26741214-26741261)
chr6 (10-73)||(26741537-26741600)
chr6 (380-427)||(26809885-26809932)
chr6 (10-73)||(26974933-26974996)
chr6 (335-374)||(27317676-27317715)
chr6 (335-374)||(27581275-27581314)
chr6 (10-73)||(27665360-27665423)
chr6 (325-374)||(26958799-26958848)
chr6 (325-374)||(27667862-27667911)
chr6 (373-412)||(27667976-27668015)
chr6 (497-559)||(28790577-28790639)
chr6 (642-675)||(26720068-26720101)
chr6 (520-568)||(27611554-27611603)
[»] chr2 (1 HSPs)
chr2 (201-374)||(17994141-17994307)
[»] chr1 (1 HSPs)
chr1 (493-551)||(28165515-28165573)
[»] scaffold0419 (1 HSPs)
scaffold0419 (497-559)||(11720-11782)
[»] scaffold0277 (2 HSPs)
scaffold0277 (497-559)||(427-489)
scaffold0277 (497-559)||(9560-9622)


Alignment Details
Target: chr6 (Bit Score: 608; Significance: 0; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 608; E-Value: 0
Query Start/End: Original strand, 9 - 671
Target Start/End: Complemental strand, 26848605 - 26847942
Alignment:
Q  9 attaccagtgaaactgaatctagtgtcggtgcccctgaaactaatgaacacatcatagttgaaattattggaggaagaggaagacaaagaggaagaagaa 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  26848605 attaccagtgaaactgaatctagtgtcggtgcccctgaaactaatgaacacatcatagttgaaattattgcaggaagaggaagacaaagaggaagaagaa 26848506  T
Q  109 gaaggtgattgcacagccatgggaagaagtgatagtgttgtgttattctcggatctgttnnnnnnnnctgggaaggtagattatcagtgttgtgcattta 208  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||    
T  26848505 gaaggtgattgcacagccatgagaagaaatgatagtgttgtgttattctcggatctgttaaaaaaaactgggaaggtagattatcagtgttgtgcattta 26848406  T
Q  209 acattagtcacgaaacctccttctcatttttctctagccgtgtggaccagtcacaattattgtaccaccttgttttttctcccactataactttttgcta 308  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  26848405 acattagtcacgaaacctccttctcattttcctctagccgtgtggaccagtcataattattgtaccaccttgttttttctcccactataactttttgcta 26848306  T
Q  309 aaacaatcaaattaatcaattattgctcaactttttctttagtgaaaatcattgcagaaccattatctttctttgttacttcatgagagtaaaataatag 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26848305 aaacaatcaaattaatcaattattgctcaactttttctttagtgaaaatcattgcagaaccattatctttctttgttacttcatgagagtaaaataatag 26848206  T
Q  409 tatatgaaataaaaataaatgttgttg-ttctgatggaaaaagaaaggttgagttaagggcatcacaatgaataaagagactaggtgatatttagaattt 507  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26848205 tatatgaaataaaaataaatgttgttgtttctgatggaaaaagaaaggttgagttaagggcatcacaatgaataaagagactaggtgatatttagaattt 26848106  T
Q  508 taggcctcgagaatcaaacagcttaataactaatgcatcaaaaaagcgtaatattctctctcccattttaggcccctgcttttgtttggctctacacttt 607  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  26848105 taggcctcgagaatcaaacagcttaataactaatgcatcaaaaaagcgtaatattctctctcccattttaggcctctgcttttgtttggctctacacttt 26848006  T
Q  608 tactatgtgagaaacttccttcctacttcctatcttccatgtaatttctgtaaagcaatgtgaa 671  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26848005 tactatgtgagaaacttccttcctacttcctatcttccatgtaatttctgtaaagcaatgtgaa 26847942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 442 - 551
Target Start/End: Original strand, 27666597 - 27666706
Alignment:
Q  442 tggaaaaagaaaggttgagttaagggcatcacaatgaataaagagactaggtgatatttagaattttaggcctcgagaatcaaacagcttaataactaat 541  Q
    ||||||||||||||||||||| | ||||||| |||||||  |||||||| ||||||||||||| || ||||||| | |||||||||||||||| ||||||    
T  27666597 tggaaaaagaaaggttgagttgatggcatcagaatgaatcgagagactatgtgatatttagaacttcaggcctcaataatcaaacagcttaatcactaat 27666696  T
Q  542 gcatcaaaaa 551  Q
    |||| |||||    
T  27666697 gcataaaaaa 27666706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 373 - 440
Target Start/End: Original strand, 27668832 - 27668899
Alignment:
Q  373 atctttctttgttacttcatgagagtaaaataatagtatatgaaataaaaataaatgttgttgttctg 440  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  27668832 atctttctttgttacttcatgagagtaaaataacagtatatgaaataaaaataaatgtagttgttctg 27668899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 323 - 374
Target Start/End: Complemental strand, 26811220 - 26811169
Alignment:
Q  323 atcaattattgctcaactttttctttagtgaaaatcattgcagaaccattat 374  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26811220 atcaattattgttcaactttttctttagtgaaaatcattgcagaaccattat 26811169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 584 - 644
Target Start/End: Original strand, 27669598 - 27669658
Alignment:
Q  584 tgcttttgtttggctctacacttttactatgtgagaaacttccttcctacttcctatcttc 644  Q
    ||||||| ||||||||||||||||||| |||| |||||||||||||||| |||||||||||    
T  27669598 tgcttttatttggctctacacttttaccatgtaagaaacttccttcctatttcctatcttc 27669658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 324 - 374
Target Start/End: Complemental strand, 26861167 - 26861117
Alignment:
Q  324 tcaattattgctcaactttttctttagtgaaaatcattgcagaaccattat 374  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  26861167 tcaattattgatcaactttttctttaatgaaaatcattgcagaaccattat 26861117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 26949606 - 26949542
Alignment:
Q  9 attaccagtgaaactgaatctagtgtcggtgcccctgaaactaatgaacacatcatagttgaaat 73  Q
    |||||| ||||||| ||||| ||||||||| || ||||||||||||||||||||| |||||||||    
T  26949606 attaccggtgaaaccgaatcgagtgtcggtacctctgaaactaatgaacacatcaaagttgaaat 26949542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 373 - 429
Target Start/End: Complemental strand, 26660892 - 26660834
Alignment:
Q  373 atctttctttgttacttcatgagagtaaaataatag--tatatgaaataaaaataaatg 429  Q
    ||||||||||||||||||||||||||||||||| ||  ||||| |||||||||||||||    
T  26660892 atctttctttgttacttcatgagagtaaaataacagtatatataaaataaaaataaatg 26660834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 373 - 429
Target Start/End: Complemental strand, 26766863 - 26766805
Alignment:
Q  373 atctttctttgttacttcatgagagtaaaataatag--tatatgaaataaaaataaatg 429  Q
    ||||||||||||||||||||||||||||||||| ||  ||||| |||||||||||||||    
T  26766863 atctttctttgttacttcatgagagtaaaataacagtatatataaaataaaaataaatg 26766805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 26959109 - 26959046
Alignment:
Q  10 ttaccagtgaaactgaatctagtgtcggtgcccctgaaactaatgaacacatcatagttgaaat 73  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||| || || ||| ||||||    
T  26959109 ttaccggtgaaactgaatcgagtgtcggtgcccctgaaactaatgaagacgtcgtaggtgaaat 26959046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 323 - 374
Target Start/End: Complemental strand, 26974662 - 26974611
Alignment:
Q  323 atcaattattgctcaactttttctttagtgaaaatcattgcagaaccattat 374  Q
    ||||||||||| |||||||||||||| |||||| ||||||||||||||||||    
T  26974662 atcaattattgttcaactttttcttttgtgaaactcattgcagaaccattat 26974611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 323 - 374
Target Start/End: Original strand, 27310311 - 27310362
Alignment:
Q  323 atcaattattgctcaactttttctttagtgaaaatcattgcagaaccattat 374  Q
    ||||||||| | |||||||||||||||||||||||||||| |||||||||||    
T  27310311 atcaattatcgttcaactttttctttagtgaaaatcattgaagaaccattat 27310362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 25071604 - 25071540
Alignment:
Q  9 attaccagtgaaactgaatctagtgtcggtgcccctgaaactaatgaacacatcatagttgaaat 73  Q
    |||||| || |||| ||||| ||||||||| |||||||||||||||||||| |||||| ||||||    
T  25071604 attaccggtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacacgtcatagatgaaat 25071540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 27214362 - 27214294
Alignment:
Q  9 attaccagtgaaactgaatctagtgtcggtgcccctgaaactaatgaacacatcatagttgaaattatt 77  Q
    |||||| ||||||| |  || ||||||||| |||||||||||||||||||| |||||| ||||||||||    
T  27214362 attaccggtgaaaccgtgtcgagtgtcggtacccctgaaactaatgaacacgtcatagctgaaattatt 27214294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 27234866 - 27234934
Alignment:
Q  9 attaccagtgaaactgaatctagtgtcggtgcccctgaaactaatgaacacatcatagttgaaattatt 77  Q
    |||||| ||||||| |  || ||||||||| |||||||||||||||||||| |||||| ||||||||||    
T  27234866 attaccggtgaaaccgtgtcgagtgtcggtacccctgaaactaatgaacacgtcatagctgaaattatt 27234934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 323 - 378
Target Start/End: Complemental strand, 26617017 - 26616962
Alignment:
Q  323 atcaattattgctcaactttttctttagtgaaaatcattgcagaaccattatcttt 378  Q
    ||||||||||| ||||||||| || | |||||||||| ||||||||||||||||||    
T  26617017 atcaattattgttcaacttttactgtggtgaaaatcactgcagaaccattatcttt 26616962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 326 - 373
Target Start/End: Complemental strand, 26635295 - 26635248
Alignment:
Q  326 aattattgctcaactttttctttagtgaaaatcattgcagaaccatta 373  Q
    |||||||| |||||||||||||| |||||| |||||||||||||||||    
T  26635295 aattattgttcaactttttcttttgtgaaactcattgcagaaccatta 26635248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 26635634 - 26635571
Alignment:
Q  10 ttaccagtgaaactgaatctagtgtcggtgcccctgaaactaatgaacacatcatagttgaaat 73  Q
    ||||| ||||||| ||||  |||||||||||||||||||||||||||||| || ||| ||||||    
T  26635634 ttaccggtgaaaccgaattgagtgtcggtgcccctgaaactaatgaacacgtcgtaggtgaaat 26635571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 323 - 378
Target Start/End: Complemental strand, 26722945 - 26722890
Alignment:
Q  323 atcaattattgctcaactttttctttagtgaaaatcattgcagaaccattatcttt 378  Q
    ||||||||||| ||||||||| || | |||||||||| ||||||||||||||||||    
T  26722945 atcaattattgttcaacttttactgtggtgaaaatcactgcagaaccattatcttt 26722890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 326 - 373
Target Start/End: Complemental strand, 26741261 - 26741214
Alignment:
Q  326 aattattgctcaactttttctttagtgaaaatcattgcagaaccatta 373  Q
    |||||||| |||||||||||||| |||||| |||||||||||||||||    
T  26741261 aattattgttcaactttttcttttgtgaaactcattgcagaaccatta 26741214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 26741600 - 26741537
Alignment:
Q  10 ttaccagtgaaactgaatctagtgtcggtgcccctgaaactaatgaacacatcatagttgaaat 73  Q
    ||||| ||||||| ||||  |||||||||||||||||||||||||||||| || ||| ||||||    
T  26741600 ttaccggtgaaaccgaattgagtgtcggtgcccctgaaactaatgaacacgtcgtaggtgaaat 26741537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 380 - 427
Target Start/End: Complemental strand, 26809932 - 26809885
Alignment:
Q  380 tttgttacttcatgagagtaaaataatagtatatgaaataaaaataaa 427  Q
    ||||||| ||||| ||||||||||||||||||||||||| ||||||||    
T  26809932 tttgttatttcattagagtaaaataatagtatatgaaatgaaaataaa 26809885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 26974996 - 26974933
Alignment:
Q  10 ttaccagtgaaactgaatctagtgtcggtgcccctgaaactaatgaacacatcatagttgaaat 73  Q
    ||||| ||||||| ||||| ||||||||| || ||||||||||||||||| |||||| ||||||    
T  26974996 ttaccggtgaaaccgaatcgagtgtcggtacctctgaaactaatgaacacgtcataggtgaaat 26974933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 335 - 374
Target Start/End: Original strand, 27317676 - 27317715
Alignment:
Q  335 tcaactttttctttagtgaaaatcattgcagaaccattat 374  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  27317676 tcaactttttctttagtgaaaatcattgaagaaccattat 27317715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 335 - 374
Target Start/End: Original strand, 27581275 - 27581314
Alignment:
Q  335 tcaactttttctttagtgaaaatcattgcagaaccattat 374  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  27581275 tcaactttttctttagtgaaaatcattgaagaaccattat 27581314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 27665360 - 27665423
Alignment:
Q  10 ttaccagtgaaactgaatctagtgtcggtgcccctgaaactaatgaacacatcatagttgaaat 73  Q
    ||||| |||||||  |||| ||||||||| |||||||||||||||||||||||  |||||||||    
T  27665360 ttaccggtgaaaccaaatcgagtgtcggtacccctgaaactaatgaacacatcgaagttgaaat 27665423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 325 - 374
Target Start/End: Complemental strand, 26958848 - 26958799
Alignment:
Q  325 caattattgctcaactttttctttagtgaaaatcattgcagaaccattat 374  Q
    ||||||||| |||||||||||||| |||||| ||||| ||||||||||||    
T  26958848 caattattgttcaactttttcttttgtgaaactcattacagaaccattat 26958799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 325 - 374
Target Start/End: Original strand, 27667862 - 27667911
Alignment:
Q  325 caattattgctcaactttttctttagtgaaaatcattgcagaaccattat 374  Q
    ||||||||| ||||||||||||||| |||||| || ||||||||||||||    
T  27667862 caattattgttcaactttttctttactgaaaaacactgcagaaccattat 27667911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 373 - 412
Target Start/End: Original strand, 27667976 - 27668015
Alignment:
Q  373 atctttctttgttacttcatgagagtaaaataatagtata 412  Q
    ||||||||||||||||||||| || |||||||||||||||    
T  27667976 atctttctttgttacttcatgggactaaaataatagtata 27668015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 497 - 559
Target Start/End: Complemental strand, 28790639 - 28790577
Alignment:
Q  497 atttagaattttaggcctcgagaatcaaacagcttaataactaatgcatcaaaaaagcgtaat 559  Q
    |||||||||||||| |  | | ||||||||||||||||||||||||||| |||| ||| ||||    
T  28790639 atttagaattttagactacaaaaatcaaacagcttaataactaatgcattaaaacagcttaat 28790577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 642 - 675
Target Start/End: Complemental strand, 26720101 - 26720068
Alignment:
Q  642 ttccatgtaatttctgtaaagcaatgtgaatatg 675  Q
    ||||||||||||||||||||||||||||| ||||    
T  26720101 ttccatgtaatttctgtaaagcaatgtgattatg 26720068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 520 - 568
Target Start/End: Original strand, 27611554 - 27611603
Alignment:
Q  520 atcaaacagcttaataa-ctaatgcatcaaaaaagcgtaatattctctct 568  Q
    ||||||||||||||||| |||||||||||||| ||| ||||||| |||||    
T  27611554 atcaaacagcttaataaactaatgcatcaaaagagcttaatattatctct 27611603  T

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Target: chr2 (Bit Score: 57; Significance: 3e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 201 - 374
Target Start/End: Original strand, 17994141 - 17994307
Alignment:
Q  201 tgcatttaacattagtcacgaaacctccttctcatttttctctagccgtgtggaccagtcaca--attattgtaccaccttgttttttctcccactataa 298  Q
    |||||||||||| |||  |||||| ||||||||||| | || |||||||||||||||||||||  ||||||| || ||||  ||||| |||||||  | |    
T  17994141 tgcatttaacatcagtggcgaaacttccttctcattctcctatagccgtgtggaccagtcacacaattattgcactacctcatttttcctcccacagtca 17994240  T
Q  299 ctttttgctaaaacaatcaaattaatcaattattgctcaactttttctttagtgaaaatcattgcagaaccattat 374  Q
    ||||||||||||          | ||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  17994241 ctttttgctaaag---------tcatcaattattgttcaactttttctttactgaaaatcattgcagaaccattat 17994307  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 493 - 551
Target Start/End: Original strand, 28165515 - 28165573
Alignment:
Q  493 tgatatttagaattttaggcctcgagaatcaaacagcttaataactaatgcatcaaaaa 551  Q
    |||||||||||||||||| ||||   ||||||||| ||||||||| |||||||||||||    
T  28165515 tgatatttagaattttagacctcataaatcaaacaacttaataaccaatgcatcaaaaa 28165573  T

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Target: scaffold0419 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 497 - 559
Target Start/End: Complemental strand, 11782 - 11720
Alignment:
Q  497 atttagaattttaggcctcgagaatcaaacagcttaataactaatgcatcaaaaaagcgtaat 559  Q
    |||||||||||||| |  | | ||||||||||||||||||||||||||| |||| ||| ||||    
T  11782 atttagaattttagactacaaaaatcaaacagcttaataactaatgcattaaaacagcttaat 11720  T

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Target: scaffold0277 (Bit Score: 31; Significance: 0.0000001; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 497 - 559
Target Start/End: Original strand, 427 - 489
Alignment:
Q  497 atttagaattttaggcctcgagaatcaaacagcttaataactaatgcatcaaaaaagcgtaat 559  Q
    |||||||||||||| |  | | ||||||||||||||||||||||||||| |||| ||| ||||    
T  427 atttagaattttagactacaaaaatcaaacagcttaataactaatgcattaaaacagcttaat 489  T

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Target: scaffold0277; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 497 - 559
Target Start/End: Original strand, 9560 - 9622
Alignment:
Q  497 atttagaattttaggcctcgagaatcaaacagcttaataactaatgcatcaaaaaagcgtaat 559  Q
    |||||||||||||| |  | | ||||||||||||||||||||||||||| |||| ||| ||||    
T  9560 atttagaattttagactacaaaaatcaaacagcttaataactaatgcattaaaacagcttaat 9622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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