View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5848-Insertion-11 (Length: 313)
Name: NF5848-Insertion-11
Description: NF5848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5848-Insertion-11 |
 | |
|
| [»] chr3 (4 HSPs) |
| |
|
| [»] chr4 (4 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 9 - 313
Target Start/End: Complemental strand, 4528665 - 4528361
Alignment:
| Q |
9 |
cgaagttgttgttgcacttgctccatctgactattcttttcatccccaacgatctcccgagatattttctttatatcaaattcatccgagacatacaccc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4528665 |
cgaagttgttgttgcacttgctccatctgactattcttttcatccccaacgatctcccgagatattttctttatatcaaattcatccgagacatacaccc |
4528566 |
T |
|
| Q |
109 |
acatttttagctcaaaatacctttgaacatcattatcattgtagactagttgagcaagtgcagtcttacctaatcctccaatgccaactatgggaattat |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4528565 |
acatttttagctcaaaatacctttgaacatcattatcattgtagacaagttgagcaagtgcagtcttacctaatcctccaatcccaactatgggaattat |
4528466 |
T |
|
| Q |
209 |
agaaacattatctgttgcattgacatctagtagataacttttaatacatttcttttcctcatctcttccaataacttcatctttactcacaaatgagtaa |
308 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4528465 |
agaaacattatttgttgcattgtcatctagtagataacttttaatacatctcttttcctcatctcttccaataacttcatctttactcacaaatgagtaa |
4528366 |
T |
|
| Q |
309 |
gtttg |
313 |
Q |
| |
|
||||| |
|
|
| T |
4528365 |
gtttg |
4528361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 11 - 313
Target Start/End: Original strand, 4399230 - 4399532
Alignment:
| Q |
11 |
aagttgttgttgcacttgctccatctgactattcttttcatccccaacgatctcccgagatattttctttatatcaaattcatccgagacatacacccac |
110 |
Q |
| |
|
|||||| ||||| ||||| |||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
4399230 |
aagttgctgttgtacttgatccatctgactattcttttcatccccaatgatatcccaagatattttctttatatcaaatttatccgagacatgcacccac |
4399329 |
T |
|
| Q |
111 |
atttttagctcaaaatacctttgaacatcattatcattgtagactagttgagcaagtgcagtcttacctaatcctccaatgccaactatgggaattatag |
210 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4399330 |
atttttagctcaaaatggctttgaacatcattatcattgtagactagttgagcaagtgcagtcttacctaatcctccaatcccaactatgggaattatag |
4399429 |
T |
|
| Q |
211 |
aaacattatctgttgcattgacatctagtagataacttttaatacatttcttttcctcatctcttccaataacttcatctttactcacaaatgagtaagt |
310 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4399430 |
aaacattatttgttgcattgtcatctagtagataacttttaatacatttcttttcctcatctcttccaataacttcatctttactcacaaatgagtaagt |
4399529 |
T |
|
| Q |
311 |
ttg |
313 |
Q |
| |
|
||| |
|
|
| T |
4399530 |
ttg |
4399532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 11 - 313
Target Start/End: Complemental strand, 4497412 - 4497110
Alignment:
| Q |
11 |
aagttgttgttgcacttgctccatctgactattcttttcatccccaacgatctcccgagatattttctttatatcaaattcatccgagacatacacccac |
110 |
Q |
| |
|
|||||| ||||| ||||||||||| |||| |||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4497412 |
aagttgctgttgtacttgctccatttgaccgttcttttcatccccaatgatatccctagatattttctttatatcaaattcatccgagacatgcacccac |
4497313 |
T |
|
| Q |
111 |
atttttagctcaaaatacctttgaacatcattatcattgtagactagttgagcaagtgcagtcttacctaatcctccaatgccaactatgggaattatag |
210 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4497312 |
atttttagctcaaaatgcccttgaacatcattatcattgtagacaagttgagcaagtgcagtcttacctaatcctccaatgccaactatgggaattatag |
4497213 |
T |
|
| Q |
211 |
aaacattatctgttgcattgacatctagtagataacttttaatacatttcttttcctcatctcttccaataacttcatctttactcacaaatgagtaagt |
310 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4497212 |
aaacattatttgttgcattgtcatctagtagataacttttaatacatttcttttcctcatctcttccaataacttcatctttactcacaaatgagtaagt |
4497113 |
T |
|
| Q |
311 |
ttg |
313 |
Q |
| |
|
||| |
|
|
| T |
4497112 |
ttg |
4497110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 11 - 313
Target Start/End: Complemental strand, 4518472 - 4518170
Alignment:
| Q |
11 |
aagttgttgttgcacttgctccatctgactattcttttcatccccaacgatctcccgagatattttctttatatcaaattcatccgagacatacacccac |
110 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
4518472 |
aagttgttgttgtacttgctccatttgactattcttttcatccccaatgatatcccgagatattttcttcaaatcaaattcatccgagacatacacccac |
4518373 |
T |
|
| Q |
111 |
atttttagctcaaaatacctttgaacatcattatcattgtagactagttgagcaagtgcagtcttacctaatcctccaatgccaactatgggaattatag |
210 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4518372 |
atttttagctcaaaatgcttttgaacatcattatcattgtagactagttgagcaagtgcagtcttacctaatcctccaatgccaactatgggaactatag |
4518273 |
T |
|
| Q |
211 |
aaacattatctgttgcattgacatctagtagataacttttaatacatttcttttcctcatctcttccaataacttcatctttactcacaaatgagtaagt |
310 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| || || |||||||| |
|
|
| T |
4518272 |
aaacattatttgttgcattgtcatctagtagataacttttaatacatttcttttcctcatttcttccaataacttcatctgtacttacgaaagagtaagt |
4518173 |
T |
|
| Q |
311 |
ttg |
313 |
Q |
| |
|
||| |
|
|
| T |
4518172 |
ttg |
4518170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 11 - 313
Target Start/End: Complemental strand, 18046096 - 18045794
Alignment:
| Q |
11 |
aagttgttgttgcacttgctccatctgactattcttttcatccccaacgatctcccgagatattttctttatatcaaattcatccgagacatacacccac |
110 |
Q |
| |
|
|||||| ||||| ||||| |||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
18046096 |
aagttgctgttgtacttgatccatctgactattcttttcatccccaatgatatcccaagatattttctttatatcaaatttatccgagacatgcacccac |
18045997 |
T |
|
| Q |
111 |
atttttagctcaaaatacctttgaacatcattatcattgtagactagttgagcaagtgcagtcttacctaatcctccaatgccaactatgggaattatag |
210 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
18045996 |
atttttagctcaaaatggctttgaacatcattatcattgtagactagttgagcaagtgcagtcttacctaatcctccaatcccaactatgggaattatag |
18045897 |
T |
|
| Q |
211 |
aaacattatctgttgcattgacatctagtagataacttttaatacatttcttttcctcatctcttccaataacttcatctttactcacaaatgagtaagt |
310 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18045896 |
aaacattatttgttgcattgtcatctagtagataacttttaatacatttcttttcctcatctcttccaataacttcatctttactcacaaatgagtaagt |
18045797 |
T |
|
| Q |
311 |
ttg |
313 |
Q |
| |
|
||| |
|
|
| T |
18045796 |
ttg |
18045794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 11 - 313
Target Start/End: Original strand, 18035057 - 18035359
Alignment:
| Q |
11 |
aagttgttgttgcacttgctccatctgactattcttttcatccccaacgatctcccgagatattttctttatatcaaattcatccgagacatacacccac |
110 |
Q |
| |
|
|||||| ||||| ||||||||||| |||| |||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
18035057 |
aagttgctgttgtacttgctccatttgaccgttcttttcatccccaatgatatccctagatattttctttatatcaaattcatccgagacatgcacccac |
18035156 |
T |
|
| Q |
111 |
atttttagctcaaaatacctttgaacatcattatcattgtagactagttgagcaagtgcagtcttacctaatcctccaatgccaactatgggaattatag |
210 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18035157 |
atttttagctcaaaatgcccttgaacatcattatcattgtagacaagttgagcaagtgcagtcttacctaatcctccaatgccaactatgggaattatag |
18035256 |
T |
|
| Q |
211 |
aaacattatctgttgcattgacatctagtagataacttttaatacatttcttttcctcatctcttccaataacttcatctttactcacaaatgagtaagt |
310 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18035257 |
aaacattatttgttgcattgtcatctagtagataacttttaatacatttcttttcctcatctcttccaataacttcatctttactcacaaatgagtaagt |
18035356 |
T |
|
| Q |
311 |
ttg |
313 |
Q |
| |
|
||| |
|
|
| T |
18035357 |
ttg |
18035359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 217
Target Start/End: Original strand, 7129022 - 7129095
Alignment:
| Q |
144 |
tcattgtagactagttgagcaagtgcagtcttacctaatcctccaatgccaactatgggaattatagaaacatt |
217 |
Q |
| |
|
|||||||| || |||||||||||||||||||| || | ||||||||| |||| ||| | ||| || |||||||| |
|
|
| T |
7129022 |
tcattgtatacaagttgagcaagtgcagtctttccaagtcctccaattccaattatagaaataattgaaacatt |
7129095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 217
Target Start/End: Complemental strand, 7482116 - 7482043
Alignment:
| Q |
144 |
tcattgtagactagttgagcaagtgcagtcttacctaatcctccaatgccaactatgggaattatagaaacatt |
217 |
Q |
| |
|
|||||||| || |||||||||||||||||||| || | ||||||||| |||| ||| | ||| || |||||||| |
|
|
| T |
7482116 |
tcattgtatacaagttgagcaagtgcagtctttccaagtcctccaattccaattatagaaataattgaaacatt |
7482043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University