View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5848-Insertion-13 (Length: 189)
Name: NF5848-Insertion-13
Description: NF5848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5848-Insertion-13 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 3e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 8 - 189
Target Start/End: Complemental strand, 36670957 - 36670776
Alignment:
| Q |
8 |
acagaacataacaatgagtttcaacaacacattttcactttttagcctcttcttgaccattttatccctttggttttcattctccaatgcacaaaactta |
107 |
Q |
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| T |
36670957 |
acagaacataacaatgagtttcaacaacacattttcactttttagcctcttcttgaccattttatccctttggttttcattctccaatgcacaaaactta |
36670858 |
T |
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| Q |
108 |
cctcaagattttgtcgatgcccacaacacagctcgtgcacaagttggcgttgcaaacattacttgggacaatacagttgcta |
189 |
Q |
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| T |
36670857 |
cctcaagattttgtcgatgcccacaacacagctcgtgcacaagttggcgttgcaaacattacttgggacaacacagttgcta |
36670776 |
T |
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Target: chr1 (Bit Score: 28; Significance: 0.000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 58 - 97
Target Start/End: Original strand, 1772322 - 1772361
Alignment:
| Q |
58 |
tcttgaccattttatccctttggttttcattctccaatgc |
97 |
Q |
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| T |
1772322 |
tcttgaccatttgatccttgtggttttcattctccaatgc |
1772361 |
T |
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