View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5848-Insertion-16 (Length: 64)
Name: NF5848-Insertion-16
Description: NF5848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5848-Insertion-16 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 56; Significance: 5e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-24
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 1950583 - 1950638
Alignment:
| Q |
9 |
aaaagtactcctttttagcatctgtatccatctcatgaaacctcttcacaccatcc |
64 |
Q |
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| T |
1950583 |
aaaagtactcctttttagcatctgtatccatctcatgaaacctcttcacaccatcc |
1950638 |
T |
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Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-18
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 2028407 - 2028358
Alignment:
| Q |
15 |
actcctttttagcatctgtatccatctcatgaaacctcttcacaccatcc |
64 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2028407 |
actcctttttagcatctgtctccatctcatgaaacctcttcacaccatcc |
2028358 |
T |
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