View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5848-Insertion-3 (Length: 880)
Name: NF5848-Insertion-3
Description: NF5848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5848-Insertion-3 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 774; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 774; E-Value: 0
Query Start/End: Original strand, 8 - 880
Target Start/End: Complemental strand, 24986736 - 24985871
Alignment:
| Q |
8 |
aattgcaactgaaccagtcattttgagagcctgcataataagagtgaacagagtgaattggatacattctaatgaatattctgaaacaaaagattgttta |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
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| T |
24986736 |
aattgcaactgaaccagtcattttgagagcctgcataataagagtgaacagagtgaataggatacattctaatgaatattctgaaaccaaagattgttta |
24986637 |
T |
|
| Q |
108 |
ctgggaaagtttttgcataaggatggattcttctcataagcaacatgaaaaataacttaccaatagtatcagatcaagggcatcggaagagagtttcatt |
207 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24986636 |
ctgggaaagttttggcataaggatggattcttctcataagcaacatgaaaaataacttaccaatagtatcagatcaagggcatcggaagagagtttcatt |
24986537 |
T |
|
| Q |
208 |
atcttaacattagcaagcaattgcaaccaactaatcatgacacggccttcatacggtttataataataagtgatgtaatcaatatatacttcttctagaa |
307 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24986536 |
atcttaacattagcaagcaattgtaaccaactaatcatgacacggccttcatacggtttataataataagtgatgtaatcaatatatacttcttctagaa |
24986437 |
T |
|
| Q |
308 |
aaggtagattgcttgcagagggtgcttcgaaactaggaggaccattgatagtgagagaagtaagttttggagtagaaaacataggcaactttgtaattgc |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
24986436 |
aaggtagattgcttgcagagggtgcttcgaaactaggaggaccattgatagtgagagaagtaagttttggagtagaaaaca----caactttgtaattgc |
24986341 |
T |
|
| Q |
408 |
gatcttctttaacatacaggttgttactaccaatagtcaaactagaaacttcagaattggatatgcagagggcttgtgcatcatcttgtaaatgacaact |
507 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24986340 |
ggtcttctttaacatacaggttgttactaccaatagtcaaactagaaacttcagaattggatatgcagagggcttgtgcatcatcttgtaaatgacaact |
24986241 |
T |
|
| Q |
508 |
tataatgaccaaagtattcaacattttacattttgaaaagggctcagcacagccattgtcactcgtagtgaaagtgaaatccagaagatgcaagattttc |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24986240 |
tataatgaccaaagtattcaacattttacattttgaaaagggctcagcacagccattgtcactcgtagtgaaagtgaaatccagaagatgcaagattttc |
24986141 |
T |
|
| Q |
608 |
aatgacggcaaattcaaagattttggaaacattgttccattagagtcatatcgttgccaaaagccgagcttaagaaatgtcaaagattgacaagaaaaaa |
707 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24986140 |
aatgacggcaaattcaaagattttggaaacattgttccattagagtcatatcgttgccaaaagccgagcttaagaaatgtcaaagattgacaagaaaaaa |
24986041 |
T |
|
| Q |
708 |
tgtagggggataactcaagatccctttaggtactttacttcagcattgaccgtgagtttgctgcacattatgggacaccgcatattttcatgacctccag |
807 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
24986040 |
tgtagggggataactcaagatccc-ttaggtactttacttcagcattgaccgtgag-ttgctgcacattatgagacaccgcata-tttcatgacctccag |
24985944 |
T |
|
| Q |
808 |
gagagtagtttta-ggggattaacgtgacctacatgctc-caatgtacgcttatgaaggtggaatagaggtgtca |
880 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||| |
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|
| T |
24985943 |
gagagtagttttagggggattaacgtgacctacatgctcaaaatgtacgc-tatgaa-gtggaatagaggtgtca |
24985871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 203 - 633
Target Start/End: Complemental strand, 23411494 - 23411074
Alignment:
| Q |
203 |
tcattatcttaacattagcaagcaattgcaaccaactaatcatgacacggccttcatacggtttataataataagtgatgtaatcaatatatacttcttc |
302 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||| | ||| ||||||| |||||||||| ||||||||| |
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|
| T |
23411494 |
tcattatcttaacattagcaagtaattgcaaccaactaatcatgatggaatcttcacacggtctgtaaggataagtg---taatcaatatttacttcttc |
23411398 |
T |
|
| Q |
303 |
tagaaaaggtagattgcttgcagagggtgcttcgaaactaggaggaccattgatagtgagagaagtaagttttggagtagaaaacataggcaactttgta |
402 |
Q |
| |
|
|||||| |||||| | || |||||||||||||||| ||||| ||||| || ||| ||||||||||||||||||||| ||| || |||| ||||| |
|
|
| T |
23411397 |
tagaaagggtagaccgtgtgtagagggtgcttcgaaagtaggacgaccactggcagtaagagaagtaagttttggagtacaaagca----caacgttgta |
23411302 |
T |
|
| Q |
403 |
attgcgatcttctttaacatacaggttgttactaccaatagtcaaactagaaacttcagaattggatatgcagagggcttgtgcatcatcttgtaaatga |
502 |
Q |
| |
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|||| || |||| | | |||| || ||||||||| | |||||||||||||| | |||||||||||| || || ||||||||| || ||||||| | |
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| T |
23411301 |
attgtgagcttcat---cgtacacgtagttactacctacggtcaaactagaaacattagaattggatatacatagcacttgtgcattttcctgtaaataa |
23411205 |
T |
|
| Q |
503 |
caacttataatgaccaaagtattcaacattttacattttgaaaagggctcagcacagccattgtcactcgtagtgaaagtgaaatccagaagatgcaaga |
602 |
Q |
| |
|
|||| ||||||||||| |||| |||||| ||||| ||||||||||||||||| ||||| ||||| ||||||||||||| | | ||||||||||| |
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|
| T |
23411204 |
caacaaataatgaccaatgtatccaacatgttacaggctgaaaagggctcagcacggccatcatcactagtagtgaaagtgagacaccgaagatgcaagg |
23411105 |
T |
|
| Q |
603 |
ttttcaatgacggcaaattcaaagattttgg |
633 |
Q |
| |
|
|||| ||||| ||||| ||||| ||||||| |
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|
| T |
23411104 |
tttttaatgatggcaagttcaacaattttgg |
23411074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 203 - 642
Target Start/End: Original strand, 23272771 - 23273200
Alignment:
| Q |
203 |
tcattatcttaacattagcaagcaattgcaaccaactaatcatgacacggccttcatacggtttataataataagtgatgtaatcaatatatacttcttc |
302 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| |||| ||||| | ||| | ||||| |||||||||| || |||||| |
|
|
| T |
23272771 |
tcattatcttaacattagcaagtaattgcaaccaactaatcatgatggaatattcacacggtctgtaaggaaaagtg---taatcaatatttatttcttc |
23272867 |
T |
|
| Q |
303 |
tagaaaaggtagattgcttgcagagggtgcttcgaaactaggaggaccattgatagtgagagaagtaagttttggagtagaaaacataggcaactttgta |
402 |
Q |
| |
|
|| ||| |||||| | || ||| |||||||||||| ||||| ||||| || ||| ||||||||||||||||||||| ||| || |||| ||||| |
|
|
| T |
23272868 |
taaaaagggtagaccgtgtgtagatggtgcttcgaaagtaggatgaccactggcagtaagagaagtaagttttggagtacaaagca----caacgttgta |
23272963 |
T |
|
| Q |
403 |
attgcgatcttctttaacatacaggttgttactaccaatagtcaaactagaaacttcagaattggatatgcagagggcttgtgcatcatcttgtaaatga |
502 |
Q |
| |
|
|||| || |||| | | || | || ||||||||| | |||||||||||||| | |||||||||||| || || ||||||||| || ||||||| | |
|
|
| T |
23272964 |
attgtgagcttcat---cgtaaacgtagttactacctacggtcaaactagaaacattagaattggatatacatagcacttgtgcattttcctgtaaataa |
23273060 |
T |
|
| Q |
503 |
caacttataatgaccaaagtattcaacattttacattttgaaaagggctcagcacagccattgtcactcgtagtgaaagtga-aatccagaagatgcaag |
601 |
Q |
| |
|
|||| ||||||||||| |||| |||||| ||||| ||||||||||||||||| ||||| ||||| ||||||||||||| | ||| || |||||| |
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|
| T |
23273061 |
caacaaataatgaccaatgtatccaacatgttacaagctgaaaagggctcagcacggccatcatcactagtagtgaaagtgagacaccacaa-atgcaaa |
23273159 |
T |
|
| Q |
602 |
attttcaatgacggcaaattcaaagattttggaaacattgt |
642 |
Q |
| |
|
|||||||||| ||||| ||||| ||||||||||||||||| |
|
|
| T |
23273160 |
gttttcaatgatggcaagttcaaggattttggaaacattgt |
23273200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 5e-37; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 282 - 639
Target Start/End: Original strand, 34799815 - 34800165
Alignment:
| Q |
282 |
gtaatcaatatatacttcttctagaaaaggtagattgcttgcagagggtgcttcgaaactaggaggaccattgatagtgagagaagtaagttttggagta |
381 |
Q |
| |
|
||||| ||||| |||||||| |||||||||| ||||| ||||||||| ||| |||| ||||| | | | ||||||||||||| ||||||||||||||| |
|
|
| T |
34799815 |
gtaattaatattcacttcttcaagaaaaggtaaattgcatgcagagggggctgagaaaataggatggcgaatgatagtgagagacgtaagttttggagta |
34799914 |
T |
|
| Q |
382 |
gaaaacataggcaactttgtaattgcgatcttctttaacatacaggttgttactaccaatagtcaaactagaaacttcagaattggatatgcagagggct |
481 |
Q |
| |
|
||| || |||||||| |||||| | ||| |||| ||| || | |||||| || |||| ||||||||| | |||||| || | | | |||| |
|
|
| T |
34799915 |
caaagca----caactttgaaattgccagcttgtttac---acaagtgggcactacctatggtcagactagaaacgttagaatttgacacggaaagggta |
34800007 |
T |
|
| Q |
482 |
tgtgcatcatcttgtaaatgacaactt-ataatgaccaaagtattcaacattttacattttgaaaagggctcagcacagccattgtcactcgtagtgaaa |
580 |
Q |
| |
|
||||||||||| ||||||| || ||| | ||||||||||||| ||||||| |||||| |||||||||||||| |||||||||||| ||| ||||||||| |
|
|
| T |
34800008 |
tgtgcatcatcctgtaaat-accactccacaatgaccaaagtactcaacatgttacatgttgaaaagggctcaacacagccattgttacttgtagtgaaa |
34800106 |
T |
|
| Q |
581 |
gtgaaatccagaagatgcaagattttcaatgacggcaaattcaaagattttggaaacat |
639 |
Q |
| |
|
|| | | | ||||| |||| ||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
34800107 |
gtaagaccactaagatacaaggttttcaatgccggcaagttcaaagattttggaaacat |
34800165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 444 - 640
Target Start/End: Original strand, 2563235 - 2563431
Alignment:
| Q |
444 |
tcaaactagaaacttcagaattggatatgcagagggcttgtgcatcatcttgtaaatgacaactt-ataatgaccaaagtattcaacattttacattttg |
542 |
Q |
| |
|
|||||||||||| | |||||| |||||||||||| ||||||||| || | |||| | ||||| ||||||||||||||| ||| ||| |||||| ||| |
|
|
| T |
2563235 |
tcaaactagaaatgttagaattaaatatgcagagggattgtgcatcttcctctaaa-caaaacttaataatgaccaaagtactcagcatcttacatgttg |
2563333 |
T |
|
| Q |
543 |
aaaagggctcagcacagccattgtcactcgtagtgaaagtgaaatccagaagatgcaagattttcaatgacggcaaattcaaagattttggaaacatt |
640 |
Q |
| |
|
|||||||||||||||| ||||| ||||| ||| |||||||| | |||||||||| ||||||||| |||||| ||||| || |||||||||||| |
|
|
| T |
2563334 |
aaaagggctcagcacaaccattttcacttgtaaagaaagtgagaaaagaaagatgcaaggttttcaatgccggcaagttcaatgactttggaaacatt |
2563431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 443 - 639
Target Start/End: Original strand, 34776026 - 34776230
Alignment:
| Q |
443 |
gtcaaactagaaacttcagaattggatatgcagagggcttgtg--catcatcttgtaaatgacaacttataatgaccaaagtattcaacattttacattt |
540 |
Q |
| |
|
|||| ||||||||| | |||||||||||| |||||| ||| | ||||||| |||||| |||| | ||||| |||| || ||||||| || ||| | |
|
|
| T |
34776026 |
gtcagactagaaaccttggaattggatatggagagggtttgggggcatcatcctgtaaaaaccaaccgacaatgaacaaattactcaacatgttgcatgt |
34776125 |
T |
|
| Q |
541 |
tgaaaagggctcagcacagccattgtca------ctcgtagtgaaagtgaaatccagaagatgcaagattttcaatgacggcaaattcaaagattttgga |
634 |
Q |
| |
|
||||||||||||| ||||||||||||| || |||||||| ||| ||| |||||||||| ||||||||| |||||| ||||||||||||||| |
|
|
| T |
34776126 |
tgaaaagggctcaatacagccattgtcattgtcacttgtagtgaagatgagatcagtaagatgcaaggttttcaatgccggcaagttcaaagattttgga |
34776225 |
T |
|
| Q |
635 |
aacat |
639 |
Q |
| |
|
||||| |
|
|
| T |
34776226 |
aacat |
34776230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 107
Target Start/End: Original strand, 34799567 - 34799617
Alignment:
| Q |
57 |
agagtgaattggatacattctaatgaatattctgaaacaaaagattgttta |
107 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||| | || |||||||| |
|
|
| T |
34799567 |
agagtgaattggatacattcaaatgaatattctcaaagacaacattgttta |
34799617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 606 - 643
Target Start/End: Original strand, 42602534 - 42602571
Alignment:
| Q |
606 |
tcaatgacggcaaattcaaagattttggaaacattgtt |
643 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
42602534 |
tcaatgccggcaaattcaaagattttggaaacaatgtt |
42602571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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