View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5848-Insertion-4 (Length: 835)
Name: NF5848-Insertion-4
Description: NF5848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5848-Insertion-4 |
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Alignment Details
Target: chr2 (Bit Score: 747; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 747; E-Value: 0
Query Start/End: Original strand, 9 - 833
Target Start/End: Original strand, 11179114 - 11179929
Alignment:
| Q |
9 |
aaaaatgggtaatattggagttttaactggatctcaaggtgaaattagaacacaatgtaatgttgtgaatgggaattcttctggattggcttctgtagtc |
108 |
Q |
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| T |
11179114 |
aaaaatgggtaatattggagttttaactggatctcaaggtgaaattagaacacaatgtaatgctgtgaatgggaattcttctggattggcttctgtagtc |
11179213 |
T |
|
| Q |
109 |
accaaagaatcatcagaagatggaatggctagctcattctaaacatacgcttggaaaatatcgaagaggttcaatattttctgcatacatatatgatgtg |
208 |
Q |
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| T |
11179214 |
accaaagaatcatcagaagatggaatggctagctcattctaaacatacgcttggaaaatatcgaagaggttcaatattttctgcatacatatatgatgtg |
11179313 |
T |
|
| Q |
209 |
tgtatgtggtggatcacgataattaatctctgtttgtatgctctttctagttatatactatgtttctgttttcttcttcaagttgattagggaccgtaga |
308 |
Q |
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| T |
11179314 |
tgtatgtggtggatcacgataattaatctctgcttgtatgctctttctagttctatactatgtttttgttttgttcttcaagttgattggggaccgtaga |
11179413 |
T |
|
| Q |
309 |
agctccctaataataattgtgtcaaa-gttttttaatgtgttatgtcataatgttattttctaaaatacttatacaagtatttatatgttaaatatgatt |
407 |
Q |
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| T |
11179414 |
agctccctaataatatttgtgtcaaaagttttttaatgtgttatgtcataatgttattttctaaaatacttattcaagtatttatatgttaaatatgatt |
11179513 |
T |
|
| Q |
408 |
gaatgtctgcatgaaattcttttatattgtcaagaatggagcgagaaacttgtttaaaaaagaaatagcaaaacatatagaacacccatactcatagcaa |
507 |
Q |
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| T |
11179514 |
gaatgtctgcatgaaattcttttatattgtcaagaatggagcgagaaacttgtttaaaaaagaaatagcaaaacatatagaacacccatactcatagcaa |
11179613 |
T |
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| Q |
508 |
atcttcaaattaaataggcttggtcagattatttttgcaagcttattcttgagaagtgtagaaatgtcaagaatgttgacgacgccataattgaatatat |
607 |
Q |
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| T |
11179614 |
atcttcaaattaaataggcttggtcagattatttttgcaagcttattcttgagaagtgtagaaatgtcaagaatgttgacgacgccataattgaatatat |
11179713 |
T |
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| Q |
608 |
aaaggttccttgtaatgtaaccaacgtctgaaaagaagggatcgaacaaacagcatagagcttttaattttgatatcgaaataaggcgcccaaatatttt |
707 |
Q |
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| T |
11179714 |
aaaggttccttttaatgtaaccaacgtctgaaaagaagggatcgaacaaacagcatagagcttttaattttgatatcgaaataaggcgcccaaatatttt |
11179813 |
T |
|
| Q |
708 |
gcaagttattagatatttcgacatggctctggcttgaacaagtagctaattgtggtgagcacagaattgaatggagttgaatggcactataaatgaatga |
807 |
Q |
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| T |
11179814 |
gcaagttattagatatttcgacatggctctggcttgaacaagtagctaattgtggtgagcacagaa----------ttgaatggcactataaatgaatga |
11179903 |
T |
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| Q |
808 |
agaggatcatctcttaagcgtgatct |
833 |
Q |
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| T |
11179904 |
agaggatcatctcttaagcgtgatct |
11179929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 11183543 - 11183488
Alignment:
| Q |
13 |
atgggtaatattggagttttaactggatctcaaggtgaaattagaacacaatgtaa |
68 |
Q |
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| T |
11183543 |
atgggtaatattggagtgttaactggaactcaaggtgaagttagaacacactgtaa |
11183488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 11190767 - 11190712
Alignment:
| Q |
13 |
atgggtaatattggagttttaactggatctcaaggtgaaattagaacacaatgtaa |
68 |
Q |
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| T |
11190767 |
atgggtaatattggagtgttaactggaactcaaggtgaagttagaacacactgtaa |
11190712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 11173034 - 11173090
Alignment:
| Q |
31 |
ttaactggatctcaaggtgaaattagaacacaatgtaatgttgtgaatgggaattct |
87 |
Q |
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| T |
11173034 |
ttaactggatctcaaggtgaaattagaaaacaatgtaactttgttaatggaaattct |
11173090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 150
Target Start/End: Complemental strand, 11190681 - 11190636
Alignment:
| Q |
105 |
agtcaccaaagaatcatcagaagatggaatggctagctcattctaa |
150 |
Q |
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| T |
11190681 |
agtcaccaaagattcatcagaagatggtattgttagctcattctaa |
11190636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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