View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5848-Insertion-5 (Length: 717)
Name: NF5848-Insertion-5
Description: NF5848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5848-Insertion-5 |
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Alignment Details
Target: chr7 (Bit Score: 564; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 80 - 690
Target Start/End: Complemental strand, 46104327 - 46103718
Alignment:
| Q |
80 |
gctaccacatttaatttaatgtaatggtttgttaactaagtataatctcaaaattaaattaaaactggacctaagtaatttattaatttctctgaacaag |
179 |
Q |
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| T |
46104327 |
gctaccacatttaatttaatgtaatggtttgttaactaagtataatctcaaaattaaattaaaactggacataagtaatt-attaatttctctgaacaag |
46104229 |
T |
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| Q |
180 |
tatacgtaccagttcccatgaacggaacaaaatcgtcgacggtgacttgaacaccgatctcggcgaagaaatcaacaccggctcttctagaaggttcttc |
279 |
Q |
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| T |
46104228 |
tatacgtaccagttcccatgaacggaacaaaatcgtcgacggtgacttgaacaccgatctcggcgaagaaatcaacaccggatcttctagaaggttcttc |
46104129 |
T |
|
| Q |
280 |
actgttacagagaacaccgtccatatcaaacaagactgcagaaactttcccccattcttgtgattttgcagcaacattcttctcttcaacgttaatcgcg |
379 |
Q |
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| T |
46104128 |
actgttacagagaacaccgtccatatcaaacaagactgcagaaactttcccccattcttgtgattttgcagcaacattcttctcttcaacgttaatcgcg |
46104029 |
T |
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| Q |
380 |
caagctttcacagcaagtcgtctcggagttgaaacgaatcgtttagaatgggaatggaagaatcgagaaggtttggtgagtcgtttgagactagaggaga |
479 |
Q |
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| T |
46104028 |
caagctttcacagcaagtcgtctcggagttgaaacgaatcgtttagaatgggaatggaagaatcgagaaggtttggtgagtcgtttgagactagaagaga |
46103929 |
T |
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| Q |
480 |
agatgaagtttgttgtggttagataagagtgtgttgtttgaaaggccatggccatggccatgatgaatgaatgaatgagtgctgatttactaacgaaact |
579 |
Q |
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| T |
46103928 |
agatgaagtttgttgtggttagataagagtgtgttgtttgaaaggccatggccatggccatgatgaatgaatgaatgagtgctgatttactaacgaaact |
46103829 |
T |
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| Q |
580 |
gattttgtattactattaccaccaaattcattcatgcaa-ttttaatgttttcatttcaatttctggctcgcatagtatgtttgttatggtgggaaagaa |
678 |
Q |
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| T |
46103828 |
gattttgtattactattaccaccaaattcattcatgcaatttttaatgttttcatttcaatttctcgcttgca-agtatgtatgttatggtgggaaagaa |
46103730 |
T |
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| Q |
679 |
ctgccagcgata |
690 |
Q |
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| T |
46103729 |
ctgccagcgata |
46103718 |
T |
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