View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5848-Insertion-6 (Length: 645)
Name: NF5848-Insertion-6
Description: NF5848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5848-Insertion-6 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 613; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 9 - 645
Target Start/End: Original strand, 3087384 - 3088020
Alignment:
| Q |
9 |
tgttctactttcagcatagtacctggtgtcattggatggagcaaagagggtcatgagatgacatgtctaattgcacaggtaaagttcaaaccctagccct |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3087384 |
tgttctactttcagcatagtacctggtgtcattggatggagcaaagagggtcatgagatgacatgtctaattgcacaggtaaagttcaaaccctagccct |
3087483 |
T |
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| Q |
109 |
cagctaacaaacatagtgtgtctggttatgccataaacattagatagatatgactagattgaaaggtttacacacgtgtcactaacctaaaatcaattct |
208 |
Q |
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| T |
3087484 |
cagctaacaaacatagtgtgtctggttatgcgataaacattagatagatatggctagattgaaaggtttagacacgtatcactaacctaaaatcaattct |
3087583 |
T |
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| Q |
209 |
aaaatcaaaagcgaaacataactatttatggtcaaatcacgtatcactaacctaaaatcaattctaaaatccaaagcgaaacataactatttatagtcaa |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3087584 |
aaaatcaaaagcgaaacataactatttatggtcaaatcacgtatcactaacctaaaatcaattctaaaatccaaagcgaaacataactatttatagtcaa |
3087683 |
T |
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| Q |
309 |
atcacgtttcagtaacctaaaaacaattgacaattctaagaaatacaaatgtgaaccaaacatatacatagctaatgtatcaaatgattgtcaagctggt |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3087684 |
atcacgtttcagtaacctaaaaacaattgacaattctaagaaatacaaatgtgaaccaaacatatacatagctaatgtatcaaatgattgtcatgctggt |
3087783 |
T |
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| Q |
409 |
tatgaataagtataagggctaattcaaataactgttattcttgaagggtattattggaatcgtaattatgataaagtaattgatgatttctatatgattg |
508 |
Q |
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| T |
3087784 |
tatgaataagtataagggctaattcaaataactgttattcttgaagggtattattggaatcataattatgataaagtaattgatgatttctatatgattg |
3087883 |
T |
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| Q |
509 |
ataggcacttttaaagcctgaggcatcagaagcagttcatcatttgttacctccccatgtcaatggtaacttatcagccttatgtgtatggcctgatcaa |
608 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3087884 |
ataggcacttttaaagcctgaggcatcagaagcagttcatcatttgttacctccccatgtcaatggtaacttatcagccttatgtgtatggcctgatcaa |
3087983 |
T |
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| Q |
609 |
attaggcactggtacaaatatagatggacaagtccac |
645 |
Q |
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| T |
3087984 |
attaggcactggtacaaatatagatggacaagtccac |
3088020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 263 - 329
Target Start/End: Complemental strand, 34922185 - 34922119
Alignment:
| Q |
263 |
aaatcaattctaaaatccaaagcgaaacataactatttatagtcaaatcacgtttcagtaacctaaa |
329 |
Q |
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| T |
34922185 |
aaatcaattccaaagtcggaagccaaacataacaatttatagtcaaatcaagtttaactaacctaaa |
34922119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 282 - 314
Target Start/End: Complemental strand, 34898768 - 34898736
Alignment:
| Q |
282 |
aagcgaaacataactatttatagtcaaatcacg |
314 |
Q |
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| T |
34898768 |
aagcgaaacataacaatttatagtcaaatcacg |
34898736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 204 - 250
Target Start/End: Complemental strand, 11458990 - 11458944
Alignment:
| Q |
204 |
attctaaaatcaaaagcgaaacataactatttatggtcaaatcacgt |
250 |
Q |
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| T |
11458990 |
attctaaagtcaaaagccaaacgtaacaatttatggtcaaatcacgt |
11458944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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