View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5848-Insertion-8 (Length: 540)

Name: NF5848-Insertion-8
Description: NF5848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5848-Insertion-8
NF5848-Insertion-8
[»] chr1 (5 HSPs)
chr1 (8-321)||(52911365-52911677)
chr1 (331-540)||(52910958-52911166)
chr1 (396-457)||(32398772-32398831)
chr1 (404-454)||(40543096-40543146)
chr1 (401-457)||(32857995-32858051)
[»] chr7 (3 HSPs)
chr7 (182-237)||(12229549-12229604)
chr7 (251-299)||(12229503-12229551)
chr7 (397-447)||(33084904-33084953)
[»] chr2 (2 HSPs)
chr2 (396-457)||(1652586-1652645)
chr2 (396-458)||(28859551-28859613)
[»] chr3 (1 HSPs)
chr3 (396-435)||(50574742-50574781)
[»] chr8 (2 HSPs)
chr8 (396-457)||(16622593-16622652)
chr8 (398-446)||(21658862-21658910)
[»] chr5 (2 HSPs)
chr5 (396-434)||(6296925-6296963)
chr5 (396-434)||(39107815-39107853)
[»] scaffold0160 (1 HSPs)
scaffold0160 (396-457)||(29546-29606)


Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 8 - 321
Target Start/End: Complemental strand, 52911677 - 52911365
Alignment:
Q  8 attaaaaaagttagaacaagagtggtgctaaatatgcaactgaaaatttgaaaatgttgcatgaccccctacccattggcttaaagtttaagcaaacctg 107  Q
    ||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  52911677 attaaaaaagttaaaacaaaagtggtgctaactatgcaactgaaaatttgaaaatgttgcatggccccccacccattggcttaaagtttaagcaaacctg 52911578  T
Q  108 ctagtcccaaatttttcaaaccaaaagcactatgcaaaataaatttcaaggtttacctttccagtatcagcgagctcaccccagtcatagttctcacact 207  Q
    || ||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  52911577 ctcgtcccaaatttatcaaaccaaaaacacta-gcaaaataaatttcaaggtttacctttccagtatcagcgagctcaccccaatcatagttctcacact 52911479  T
Q  208 ctttcatagcaaactcagcatgcgcttttcgtttcttggtggcttcagttggcttttcagtgccaagctcactttcctcatcataattctccccgtatac 307  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  52911478 ctttcatagcaaactcagcatgcgcttttcgtttcttggaggcttcagttggctttccagtgccaagctcactttcctcatcataattctccccgtatac 52911379  T
Q  308 agaggacttgaatt 321  Q
    | ||||||||||||    
T  52911378 ataggacttgaatt 52911365  T

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Target: chr1; HSP #2
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 331 - 540
Target Start/End: Complemental strand, 52911166 - 52910958
Alignment:
Q  331 cacaaaatttagtgagacctatttgagtttcaaccaataggagaaagtatattaagaagtttgtcaatggcaaatgttcgtaattagttgttagactagt 430  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52911166 cacaaaatttagtgagacctatttgagtttcaaacaataggagaaagtatattaagaagtttgtcaatggcaaatgttcgtaattagttgttagactagt 52911067  T
Q  431 tttttcctccttcgtccgagtttgaacgcaagctcaaaccaattaccccccaagtatattaagaagtatgttgcatataatactaataaaaaaggtagaa 530  Q
    ||||||||||||| |||||||||||||||||||||   ||     |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  52911066 tttttcctccttcctccgagtttgaacgcaagctc-cccccccccccccccaagtatattaagaagtctgttgcaaataatactaataaaaaaggtagaa 52910968  T
Q  531 tttcttccat 540  Q
    ||||||||||    
T  52910967 tttcttccat 52910958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 457
Target Start/End: Complemental strand, 32398831 - 32398772
Alignment:
Q  396 aatggcaaatgttcgtaattagttgttagactagttttttcctccttcgtccgagtttgaac 457  Q
    |||||||||| || |||||||||||||||| ||||||||  |||||||||| ||||||||||    
T  32398831 aatggcaaatattagtaattagttgttagattagttttt--ctccttcgtctgagtttgaac 32398772  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 404 - 454
Target Start/End: Original strand, 40543096 - 40543146
Alignment:
Q  404 atgttcgtaattagttgttagactagttttttcctccttcgtccgagtttg 454  Q
    ||||| |||||||||||||||| ||||||||| |||||| ||||| |||||    
T  40543096 atgttagtaattagttgttagaatagtttttttctcctttgtccgggtttg 40543146  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 401 - 457
Target Start/End: Complemental strand, 32858051 - 32857995
Alignment:
Q  401 caaatgttcgtaattagttgttagactagttttttcctccttcgtccgagtttgaac 457  Q
    |||||||| ||||||||| |||| | || |||||| ||||||||| |||||||||||    
T  32858051 caaatgttagtaattagtagttatattaatttttttctccttcgttcgagtttgaac 32857995  T

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Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 182 - 237
Target Start/End: Complemental strand, 12229604 - 12229549
Alignment:
Q  182 ctcaccccagtcatagttctcacactctttcatagcaaactcagcatgcgcttttc 237  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  12229604 ctcaccccaatcatagttctcacactctttcatagcaaactcagcatgcgcttttc 12229549  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 299
Target Start/End: Complemental strand, 12229551 - 12229503
Alignment:
Q  251 ttcagttggcttttcagtgccaagctcactttcctcatcataattctcc 299  Q
    ||||||||||||| |||||||||||||||||||||  ||||||||||||    
T  12229551 ttcagttggctttccagtgccaagctcactttccttgtcataattctcc 12229503  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 397 - 447
Target Start/End: Original strand, 33084904 - 33084953
Alignment:
Q  397 atggcaaatgttcgtaattagttgttagactagttttttcctccttcgtcc 447  Q
    |||||||||||| |||||||||||||||| ||||||||| |||||||||||    
T  33084904 atggcaaatgttagtaattagttgttagattagtttttt-ctccttcgtcc 33084953  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 457
Target Start/End: Complemental strand, 1652645 - 1652586
Alignment:
Q  396 aatggcaaatgttcgtaattagttgttagactagttttttcctccttcgtccgagtttgaac 457  Q
    ||||||||||||| |||||||||||||||| ||||||||  ||||||| |||| ||||||||    
T  1652645 aatggcaaatgttggtaattagttgttagattagttttt--ctccttcatccgggtttgaac 1652586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 396 - 458
Target Start/End: Complemental strand, 28859613 - 28859551
Alignment:
Q  396 aatggcaaatgttcgtaattagttgttagactagttttttcctccttcgtccgagtttgaacg 458  Q
    |||| ||||||||  |||||||||||||||||| |||||||| |||||||  | |||||||||    
T  28859613 aatgacaaatgtttataattagttgttagactaattttttccaccttcgttagggtttgaacg 28859551  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 435
Target Start/End: Original strand, 50574742 - 50574781
Alignment:
Q  396 aatggcaaatgttcgtaattagttgttagactagtttttt 435  Q
    ||||||||||||| |||||||||||||||| |||||||||    
T  50574742 aatggcaaatgttagtaattagttgttagattagtttttt 50574781  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 396 - 457
Target Start/End: Original strand, 16622593 - 16622652
Alignment:
Q  396 aatggcaaatgttcgtaattagttgttagactagttttttcctccttcgtccgagtttgaac 457  Q
    |||| |||||||| |||||||||||||||| ||||||||  ||||||  |||||||||||||    
T  16622593 aatgacaaatgttagtaattagttgttagattagttttt--ctcctttatccgagtttgaac 16622652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 398 - 446
Target Start/End: Original strand, 21658862 - 21658910
Alignment:
Q  398 tggcaaatgttcgtaattagttgttagactagttttttcctccttcgtc 446  Q
    ||||||||| | ||| |||||||||||| ||||||||| ||||||||||    
T  21658862 tggcaaatgatagtacttagttgttagattagtttttttctccttcgtc 21658910  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 396 - 434
Target Start/End: Complemental strand, 6296963 - 6296925
Alignment:
Q  396 aatggcaaatgttcgtaattagttgttagactagttttt 434  Q
    ||||||||||||| |||||||||||||||| ||||||||    
T  6296963 aatggcaaatgttagtaattagttgttagattagttttt 6296925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 396 - 434
Target Start/End: Complemental strand, 39107853 - 39107815
Alignment:
Q  396 aatggcaaatgttcgtaattagttgttagactagttttt 434  Q
    ||||||||||||| |||||||||||||||| ||||||||    
T  39107853 aatggcaaatgttagtaattagttgttagaatagttttt 39107815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 457
Target Start/End: Complemental strand, 29606 - 29546
Alignment:
Q  396 aatggcaaatgttcgtaattagttgttagactagttttttcctccttcgtccgagtttgaac 457  Q
    ||||||||||| | |||||||||||||||  ||||||||| |||||||||||| ||| ||||    
T  29606 aatggcaaatgctagtaattagttgttagtttagtttttt-ctccttcgtccgggttggaac 29546  T

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