View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5848_high_11 (Length: 397)

Name: NF5848_high_11
Description: NF5848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5848_high_11
NF5848_high_11
[»] chr6 (25 HSPs)
chr6 (13-392)||(26848226-26848605)
chr6 (327-378)||(26811169-26811220)
chr6 (328-378)||(26861117-26861167)
chr6 (13-77)||(26949542-26949606)
chr6 (14-77)||(26959046-26959109)
chr6 (327-378)||(26974611-26974662)
chr6 (327-378)||(27310311-27310362)
chr6 (13-77)||(25071540-25071604)
chr6 (13-81)||(27214294-27214362)
chr6 (13-149)||(27234866-27234996)
chr6 (330-377)||(26635248-26635295)
chr6 (14-77)||(26635571-26635634)
chr6 (330-377)||(26741214-26741261)
chr6 (14-77)||(26741537-26741600)
chr6 (14-77)||(26974933-26974996)
chr6 (339-378)||(27317676-27317715)
chr6 (339-378)||(27581275-27581314)
chr6 (14-77)||(27665360-27665423)
chr6 (327-381)||(26616963-26617017)
chr6 (327-381)||(26722891-26722945)
chr6 (329-378)||(26958799-26958848)
chr6 (329-378)||(27667862-27667911)
chr6 (104-149)||(27214232-27214277)
chr6 (34-110)||(26811357-26811433)
chr6 (209-282)||(26974704-26974779)
[»] chr2 (1 HSPs)
chr2 (205-378)||(17994141-17994307)


Alignment Details
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 13 - 392
Target Start/End: Complemental strand, 26848605 - 26848226
Alignment:
Q  13 attaccagtgaaactgaatctagtgtcggtgcccctgaaactaatgaacacatcatagttgaaattattggaggaagaggaagacaaagaggaagaagaa 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  26848605 attaccagtgaaactgaatctagtgtcggtgcccctgaaactaatgaacacatcatagttgaaattattgcaggaagaggaagacaaagaggaagaagaa 26848506  T
Q  113 gaaggtgattgcacagccatgagaagaaatgatagtgttgtgttattctcggatctgttnnnnnnnnctgggaaggtagattatcagtgttgtgcattta 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||    
T  26848505 gaaggtgattgcacagccatgagaagaaatgatagtgttgtgttattctcggatctgttaaaaaaaactgggaaggtagattatcagtgttgtgcattta 26848406  T
Q  213 acattagtcacgaaacctccttctcatttttctctagccgtgtggaccagtcacaattattgtaccaccttgttttttctcccactataactttttgcta 312  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  26848405 acattagtcacgaaacctccttctcattttcctctagccgtgtggaccagtcataattattgtaccaccttgttttttctcccactataactttttgcta 26848306  T
Q  313 aaacaatcaaattaatcaattattgctcaactttttctttagtgaaaatcattgcagaaccattatcttcctttgctact 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  26848305 aaacaatcaaattaatcaattattgctcaactttttctttagtgaaaatcattgcagaaccattatctttctttgttact 26848226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 327 - 378
Target Start/End: Complemental strand, 26811220 - 26811169
Alignment:
Q  327 atcaattattgctcaactttttctttagtgaaaatcattgcagaaccattat 378  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26811220 atcaattattgttcaactttttctttagtgaaaatcattgcagaaccattat 26811169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 328 - 378
Target Start/End: Complemental strand, 26861167 - 26861117
Alignment:
Q  328 tcaattattgctcaactttttctttagtgaaaatcattgcagaaccattat 378  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  26861167 tcaattattgatcaactttttctttaatgaaaatcattgcagaaccattat 26861117  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 26949606 - 26949542
Alignment:
Q  13 attaccagtgaaactgaatctagtgtcggtgcccctgaaactaatgaacacatcatagttgaaat 77  Q
    |||||| ||||||| ||||| ||||||||| || ||||||||||||||||||||| |||||||||    
T  26949606 attaccggtgaaaccgaatcgagtgtcggtacctctgaaactaatgaacacatcaaagttgaaat 26949542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 26959109 - 26959046
Alignment:
Q  14 ttaccagtgaaactgaatctagtgtcggtgcccctgaaactaatgaacacatcatagttgaaat 77  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||| || || ||| ||||||    
T  26959109 ttaccggtgaaactgaatcgagtgtcggtgcccctgaaactaatgaagacgtcgtaggtgaaat 26959046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 327 - 378
Target Start/End: Complemental strand, 26974662 - 26974611
Alignment:
Q  327 atcaattattgctcaactttttctttagtgaaaatcattgcagaaccattat 378  Q
    ||||||||||| |||||||||||||| |||||| ||||||||||||||||||    
T  26974662 atcaattattgttcaactttttcttttgtgaaactcattgcagaaccattat 26974611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 327 - 378
Target Start/End: Original strand, 27310311 - 27310362
Alignment:
Q  327 atcaattattgctcaactttttctttagtgaaaatcattgcagaaccattat 378  Q
    ||||||||| | |||||||||||||||||||||||||||| |||||||||||    
T  27310311 atcaattatcgttcaactttttctttagtgaaaatcattgaagaaccattat 27310362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 25071604 - 25071540
Alignment:
Q  13 attaccagtgaaactgaatctagtgtcggtgcccctgaaactaatgaacacatcatagttgaaat 77  Q
    |||||| || |||| ||||| ||||||||| |||||||||||||||||||| |||||| ||||||    
T  25071604 attaccggtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacacgtcatagatgaaat 25071540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 27214362 - 27214294
Alignment:
Q  13 attaccagtgaaactgaatctagtgtcggtgcccctgaaactaatgaacacatcatagttgaaattatt 81  Q
    |||||| ||||||| |  || ||||||||| |||||||||||||||||||| |||||| ||||||||||    
T  27214362 attaccggtgaaaccgtgtcgagtgtcggtacccctgaaactaatgaacacgtcatagctgaaattatt 27214294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 149
Target Start/End: Original strand, 27234866 - 27234996
Alignment:
Q  13 attaccagtgaaactgaatctagtgtcggtgcccctgaaactaatgaacacatcatagttgaaattattggaggaagaggaagacaaagaggaagaagaa 112  Q
    |||||| ||||||| |  || ||||||||| |||||||||||||||||||| |||||| |||||||||| |||    |||  |   | || |||| ||||    
T  27234866 attaccggtgaaaccgtgtcgagtgtcggtacccctgaaactaatgaacacgtcatagctgaaattattagag----aggccgg--aggaagaagtagaa 27234959  T
Q  113 gaaggtgattgcacagccatgagaagaaatgatagtg 149  Q
    ||||||| ||||| |||||||||| ||||||||||||    
T  27234960 gaaggtggttgcatagccatgagaggaaatgatagtg 27234996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 330 - 377
Target Start/End: Complemental strand, 26635295 - 26635248
Alignment:
Q  330 aattattgctcaactttttctttagtgaaaatcattgcagaaccatta 377  Q
    |||||||| |||||||||||||| |||||| |||||||||||||||||    
T  26635295 aattattgttcaactttttcttttgtgaaactcattgcagaaccatta 26635248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 26635634 - 26635571
Alignment:
Q  14 ttaccagtgaaactgaatctagtgtcggtgcccctgaaactaatgaacacatcatagttgaaat 77  Q
    ||||| ||||||| ||||  |||||||||||||||||||||||||||||| || ||| ||||||    
T  26635634 ttaccggtgaaaccgaattgagtgtcggtgcccctgaaactaatgaacacgtcgtaggtgaaat 26635571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 330 - 377
Target Start/End: Complemental strand, 26741261 - 26741214
Alignment:
Q  330 aattattgctcaactttttctttagtgaaaatcattgcagaaccatta 377  Q
    |||||||| |||||||||||||| |||||| |||||||||||||||||    
T  26741261 aattattgttcaactttttcttttgtgaaactcattgcagaaccatta 26741214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 26741600 - 26741537
Alignment:
Q  14 ttaccagtgaaactgaatctagtgtcggtgcccctgaaactaatgaacacatcatagttgaaat 77  Q
    ||||| ||||||| ||||  |||||||||||||||||||||||||||||| || ||| ||||||    
T  26741600 ttaccggtgaaaccgaattgagtgtcggtgcccctgaaactaatgaacacgtcgtaggtgaaat 26741537  T

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Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 26974996 - 26974933
Alignment:
Q  14 ttaccagtgaaactgaatctagtgtcggtgcccctgaaactaatgaacacatcatagttgaaat 77  Q
    ||||| ||||||| ||||| ||||||||| || ||||||||||||||||| |||||| ||||||    
T  26974996 ttaccggtgaaaccgaatcgagtgtcggtacctctgaaactaatgaacacgtcataggtgaaat 26974933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 339 - 378
Target Start/End: Original strand, 27317676 - 27317715
Alignment:
Q  339 tcaactttttctttagtgaaaatcattgcagaaccattat 378  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  27317676 tcaactttttctttagtgaaaatcattgaagaaccattat 27317715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 339 - 378
Target Start/End: Original strand, 27581275 - 27581314
Alignment:
Q  339 tcaactttttctttagtgaaaatcattgcagaaccattat 378  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  27581275 tcaactttttctttagtgaaaatcattgaagaaccattat 27581314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 27665360 - 27665423
Alignment:
Q  14 ttaccagtgaaactgaatctagtgtcggtgcccctgaaactaatgaacacatcatagttgaaat 77  Q
    ||||| |||||||  |||| ||||||||| |||||||||||||||||||||||  |||||||||    
T  27665360 ttaccggtgaaaccaaatcgagtgtcggtacccctgaaactaatgaacacatcgaagttgaaat 27665423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 327 - 381
Target Start/End: Complemental strand, 26617017 - 26616963
Alignment:
Q  327 atcaattattgctcaactttttctttagtgaaaatcattgcagaaccattatctt 381  Q
    ||||||||||| ||||||||| || | |||||||||| |||||||||||||||||    
T  26617017 atcaattattgttcaacttttactgtggtgaaaatcactgcagaaccattatctt 26616963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 327 - 381
Target Start/End: Complemental strand, 26722945 - 26722891
Alignment:
Q  327 atcaattattgctcaactttttctttagtgaaaatcattgcagaaccattatctt 381  Q
    ||||||||||| ||||||||| || | |||||||||| |||||||||||||||||    
T  26722945 atcaattattgttcaacttttactgtggtgaaaatcactgcagaaccattatctt 26722891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 329 - 378
Target Start/End: Complemental strand, 26958848 - 26958799
Alignment:
Q  329 caattattgctcaactttttctttagtgaaaatcattgcagaaccattat 378  Q
    ||||||||| |||||||||||||| |||||| ||||| ||||||||||||    
T  26958848 caattattgttcaactttttcttttgtgaaactcattacagaaccattat 26958799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 329 - 378
Target Start/End: Original strand, 27667862 - 27667911
Alignment:
Q  329 caattattgctcaactttttctttagtgaaaatcattgcagaaccattat 378  Q
    ||||||||| ||||||||||||||| |||||| || ||||||||||||||    
T  27667862 caattattgttcaactttttctttactgaaaaacactgcagaaccattat 27667911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 149
Target Start/End: Complemental strand, 27214277 - 27214232
Alignment:
Q  104 gaagaagaagaaggtgattgcacagccatgagaagaaatgatagtg 149  Q
    |||| ||||||||||| ||||| |||||||||| ||||||||||||    
T  27214277 gaagtagaagaaggtggttgcatagccatgagaggaaatgatagtg 27214232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 110
Target Start/End: Complemental strand, 26811433 - 26811357
Alignment:
Q  34 agtgtcggtgcccctgaaactaatgaacacatcatagttgaaattattggaggaagaggaagacaaagaggaagaag 110  Q
    ||||||| | |||||||||||||||||||| |||||| |||||| ||| |||   ||||| ||| | ||||||||||    
T  26811433 agtgtcgatacccctgaaactaatgaacacgtcatagatgaaatcattagagagggaggaggacgaggaggaagaag 26811357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 282
Target Start/End: Complemental strand, 26974779 - 26974704
Alignment:
Q  209 tttaacattagtcacgaaacctccttctcatttttctctagccgtgtggaccagt--cacaattattgtaccacct 282  Q
    ||||||||||||  |||||| |||||| |||||| ||  | ||||||||||||||  |||||||||| ||||||||    
T  26974779 tttaacattagtagcgaaacttccttcacattttactacatccgtgtggaccagtcacacaattattttaccacct 26974704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 205 - 378
Target Start/End: Original strand, 17994141 - 17994307
Alignment:
Q  205 tgcatttaacattagtcacgaaacctccttctcatttttctctagccgtgtggaccagtcaca--attattgtaccaccttgttttttctcccactataa 302  Q
    |||||||||||| |||  |||||| ||||||||||| | || |||||||||||||||||||||  ||||||| || ||||  ||||| |||||||  | |    
T  17994141 tgcatttaacatcagtggcgaaacttccttctcattctcctatagccgtgtggaccagtcacacaattattgcactacctcatttttcctcccacagtca 17994240  T
Q  303 ctttttgctaaaacaatcaaattaatcaattattgctcaactttttctttagtgaaaatcattgcagaaccattat 378  Q
    ||||||||||||          | ||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  17994241 ctttttgctaaag---------tcatcaattattgttcaactttttctttactgaaaatcattgcagaaccattat 17994307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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