View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5848_high_16 (Length: 360)
Name: NF5848_high_16
Description: NF5848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5848_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 13 - 341
Target Start/End: Original strand, 16285474 - 16285802
Alignment:
| Q |
13 |
aatatttgaaggataactactcattttgaatttgttttagataactactcattagtttttaaatagattacaaaaaattaatataaaatagatatataac |
112 |
Q |
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| T |
16285474 |
aatatttgaaggataactactcattttgaatttgttttagataactactcattagtttttaaatatattacaaaatattaatataaaatagatatataac |
16285573 |
T |
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| Q |
113 |
catatctcaacaaagaacgtgaaaattacagcattactggtaacaaagaatgtaaactgaatttgccagctcaaatatccataataacttgtatgtcatt |
212 |
Q |
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| T |
16285574 |
catatctcaacaaagaacgtgaaaattacagcattactggtaacaaacaatgtaaactgaatttgccagctcaaatatccataataacttgtatgtcatt |
16285673 |
T |
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| Q |
213 |
ctggcaaagaatcattatcattattatttaaatgaaagatgaagaaaatgaattagcataagaaaatattgacatagaaatggctacatgttataatgta |
312 |
Q |
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| T |
16285674 |
caggcaaagaatcattatcattattatttaaatgaaagatgaagaaaatgaattagcataagaaaatattgacatagaaatggctacatgttataatgta |
16285773 |
T |
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| Q |
313 |
actcttagtgcttcaaacaatatctggat |
341 |
Q |
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| T |
16285774 |
actctcagtgcttcaaacaatatctggat |
16285802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 52 - 341
Target Start/End: Complemental strand, 17264261 - 17263972
Alignment:
| Q |
52 |
gataactactcattagtttttaaatagattacaaaaaattaatataaaatagatatataaccatatctcaacaaagaacgtgaaaattacagcattactg |
151 |
Q |
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| T |
17264261 |
gataactactcattagtttttaaatatattacaaaaaattaatataaaacagatatataaccatatctcaacaaagaacgtgaaaattacagcattactg |
17264162 |
T |
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| Q |
152 |
gtaacaaagaatgtaaactgaatttgccagctcaaatatccataataacttgtatgtcattctggcaaagaatcattatcattattatttaaatgaaaga |
251 |
Q |
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| T |
17264161 |
gtaacaaacaatgtaaactgaatttgccagctcaaatatccataataacttgtatgtcattcaggcaaagaatcattatcattattatttaaatgaaaga |
17264062 |
T |
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| Q |
252 |
tgaagaaaatgaattagcataagaaaatattgacatagaaatggctacatgttataatgtaactcttagtgcttcaaacaatatctggat |
341 |
Q |
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| T |
17264061 |
tgaagaaaatgaattagcataagaaaatattgacatagaaatggctacatgttataatgtaactcttagtgcttcaaacaatatctggat |
17263972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 17264339 - 17264296
Alignment:
| Q |
33 |
tcattttgaatttgttttagataactactcattagtttttaaat |
76 |
Q |
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| T |
17264339 |
tcattttgaatttgttttagataactgctcattagttgttaaat |
17264296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 76
Target Start/End: Original strand, 16285411 - 16285450
Alignment:
| Q |
37 |
tttgaatttgttttagataactactcattagtttttaaat |
76 |
Q |
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| T |
16285411 |
tttgaatttgttttagataactgctcattagttgttaaat |
16285450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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