View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5848_high_22 (Length: 261)
Name: NF5848_high_22
Description: NF5848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5848_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 256
Target Start/End: Original strand, 41468861 - 41469108
Alignment:
| Q |
17 |
atttatgtgatctgaacatgctggaccaagcactagtaggctagtagctcaccagttcaaagaaattatatgacattaaaaaaggaaaatcgcagttcca |
116 |
Q |
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| T |
41468861 |
atttatgtgatctgaacatgctggaccaagcactagtaggctagtagctcaccagttcaaagaaattatataacattaaaaaaggaaaataacagttcca |
41468960 |
T |
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| Q |
117 |
agccgagctaccaagcaatccgaccaaacatttatcagtcatgcatgttgaattcaatatttataaagtaatattaaaaaatgcataactacatag---- |
212 |
Q |
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| T |
41468961 |
agccaagctaccaagcaatccgaccaaacatttatcagtcatgcatgttgaattcaatatttataaagtaatattaaaaaatgcataactacataggaat |
41469060 |
T |
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| Q |
213 |
----gaataatagatgcatgcataatttcgatatacctgatgatgatg |
256 |
Q |
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| T |
41469061 |
aatagaataatagatgcatgcataatttcgatatacctgatgatgatg |
41469108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 167 - 254
Target Start/End: Original strand, 41523699 - 41523786
Alignment:
| Q |
167 |
aattcaatatttataaagtaatattaaaaaatgcataactacataggaataatagatgcatgcataatttcgatatacctgatgatga |
254 |
Q |
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| T |
41523699 |
aattcaatatttatcaagtaacattaaaaaatgcatatctttataggaataaaatatgcatgcataatttccatatacctgatgatga |
41523786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 167 - 254
Target Start/End: Original strand, 41514748 - 41514835
Alignment:
| Q |
167 |
aattcaatatttataaagtaatattaaaaaatgcataactacataggaataatagatgcatgcataatttcgatatacctgatgatga |
254 |
Q |
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| T |
41514748 |
aattcaatatttatcaagtaacattaaaaaatgcatatctttataggaataagagatgcattcatagtttccatatacctgatgatga |
41514835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 41703376 - 41703316
Alignment:
| Q |
139 |
accaaacatttatc-agtcatgcatgttgaattcaatatttataaagtaat-attaaaaaa |
197 |
Q |
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| T |
41703376 |
accaaacatgtatctaatcacgcatattgaattcaatatttataaagtaataattaaaaaa |
41703316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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