View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5848_high_3 (Length: 610)

Name: NF5848_high_3
Description: NF5848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5848_high_3
NF5848_high_3
[»] chr5 (8 HSPs)
chr5 (315-589)||(28398464-28398733)
chr5 (11-190)||(28398009-28398184)
chr5 (315-589)||(28390634-28390910)
chr5 (192-342)||(28398248-28398397)
chr5 (194-337)||(28390398-28390540)
chr5 (305-342)||(30485686-30485723)
chr5 (404-440)||(11079726-11079762)
chr5 (304-340)||(28398549-28398585)
[»] chr3 (6 HSPs)
chr3 (291-342)||(25735577-25735628)
chr3 (398-440)||(49906845-49906887)
chr3 (302-335)||(25735471-25735504)
chr3 (300-336)||(39721981-39722017)
chr3 (408-440)||(39722098-39722130)
chr3 (303-343)||(49906850-49906890)
[»] chr4 (7 HSPs)
chr4 (398-440)||(24572075-24572117)
chr4 (398-440)||(35765451-35765493)
chr4 (294-342)||(32742991-32743039)
chr4 (303-343)||(35765448-35765488)
chr4 (304-343)||(24572072-24572111)
chr4 (404-437)||(13216735-13216768)
chr4 (404-440)||(53840257-53840293)
[»] chr8 (7 HSPs)
chr8 (404-440)||(72804-72840)
chr8 (294-337)||(37044081-37044124)
chr8 (302-343)||(72801-72842)
chr8 (404-437)||(14976838-14976871)
chr8 (192-248)||(43488063-43488118)
chr8 (404-437)||(37044091-37044124)
chr8 (302-335)||(37044154-37044187)
[»] chr1 (4 HSPs)
chr1 (280-345)||(13694133-13694198)
chr1 (408-440)||(13694161-13694193)
chr1 (404-444)||(25089836-25089876)
chr1 (304-340)||(25089836-25089872)
[»] scaffold0018 (2 HSPs)
scaffold0018 (415-457)||(147234-147276)
scaffold0018 (304-344)||(147559-147599)
[»] chr6 (5 HSPs)
chr6 (294-343)||(29064877-29064926)
chr6 (294-343)||(29119731-29119780)
chr6 (300-336)||(6261239-6261275)
chr6 (404-440)||(29064880-29064916)
chr6 (404-440)||(29119734-29119770)
[»] chr7 (1 HSPs)
chr7 (412-440)||(5467643-5467671)


Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 315 - 589
Target Start/End: Original strand, 28398464 - 28398733
Alignment:
Q  315 tatctatatttttactcatatatcaatacggctacctctttactttgtagtatatcaatacatgtacctatttgttatttctattttacatttatacaca 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  28398464 tatctatatttttactcatatatcaatacggctacctctttactc----gtatatcaatacatgtacctattttttatttctattttacatttatacaca 28398559  T
Q  415 tgtctatatttttattcatatatcaacatgaattcctaattttattaaattatacatgtgttctactggtcttgttgtcttgatttatttctaacacaat 514  Q
    |||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  28398560 tgtctatatttttagtcatatatcaacatggattcctaattttgttaaattatacatgtgttctact-gtcttgttgtcttgatttatttctaacacaat 28398658  T
Q  515 gaaaaagatttatctgaacaaagaaaattaaatatcatgttcatgctaacatttgtgatttatgcaggttggcaa 589  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  28398659 gaaaaagatttatctgaacaaagaaaattaaatatcatgttcatgctaacacttgtgatttatgcaggttggcaa 28398733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 11 - 190
Target Start/End: Original strand, 28398009 - 28398184
Alignment:
Q  11 cataggacaaccactaattcaagagttccaactatttgttacgacattctagcagtcttcataaagtgtccacaacttgagaaatctaaatttgtcatag 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28398009 cataggacaaccactaattcaagagttccaactatttgttacgacattctagcagtcttcataaagtgtccacaacttgagaaatctaaatttgtcatag 28398108  T
Q  111 catgaggttgtcactatttctaattaatttcattgatacaaaactgaaaaattataataggaaaaatgttataccaatgt 190  Q
    ||||||||||||||||||||    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  28398109 catgaggttgtcactatttc----taatttcattgatacaaaactgaaaaataataataggaaaaatgttataccaatgt 28398184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 315 - 589
Target Start/End: Original strand, 28390634 - 28390910
Alignment:
Q  315 tatctatatttttactcatatatcaatacggctacctctttactttgtagtatatcaatacatgtacctatttgtt-atttctatttta--catttatac 411  Q
    ||||||||||||||||||||||||||||||| ||||||||||||   || ||||||||||||||||| ||||| || |||| ||||||   |||||||||    
T  28390634 tatctatatttttactcatatatcaatacggttacctctttactca-ta-tatatcaatacatgtacttatttttttatttttatttttttcatttatac 28390731  T
Q  412 acatgtctatattttt-attcatatatcaacatgaattcctaattttattaaattatacatgtgttctactggtcttgttgtcttgatttatttctaaca 510  Q
    || ||||||||||||| | |||||||||||||||||||||||||||| ||||  |||||| |||||||| || |||||||||||||||||||||| ||||    
T  28390732 acgtgtctatattttttagtcatatatcaacatgaattcctaattttgttaagctatacacgtgttctattgttcttgttgtcttgatttatttccaaca 28390831  T
Q  511 caatgaaaaagatttatctgaacaaagaaaattaaatatcatgttcatgctaacatttgtgatttatgcaggttggcaa 589  Q
    |||||||||||||||||| ||||  |||||||||||||||||||||||||||||| ||||||||||||||  |||||||    
T  28390832 caatgaaaaagatttatccgaacccagaaaattaaatatcatgttcatgctaacacttgtgatttatgcattttggcaa 28390910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 192 - 342
Target Start/End: Original strand, 28398248 - 28398397
Alignment:
Q  192 atatttgtgagtgataaatataaataaaaaa-tacgagacaaatatttgtgagtgatatggatattcttacattttttcagcatctatcaatatggtgac 290  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||| ||||||    
T  28398248 atatttgtgagtgataaatataaataaaaaaatacgagacaaatatttgtgagtgat--gaatattcttacattttttcagcatctatcaataaggtgac 28398345  T
Q  291 atatttttctgtaatttatacacatatctatatttttactcatatatcaata 342  Q
    ||| |||| |||||||||||||    ||||||||||||||||||||||||||    
T  28398346 ataattttttgtaatttatacatgcgtctatatttttactcatatatcaata 28398397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 194 - 337
Target Start/End: Original strand, 28390398 - 28390540
Alignment:
Q  194 atttgtgagtgataaatataaataaaaaatacgagacaaatatttgtgagtgatatggatattcttacattttttca-gcatctatcaatatggtgacat 292  Q
    ||||||| ||||||||||||||| ||| ||||| ||| ||||||||||||||||  ||| ||||||||||||||| | |||| |||||||||||||||||    
T  28390398 atttgtgggtgataaatataaatcaaatatacgggaccaatatttgtgagtgat--ggacattcttacatttttttatgcatatatcaatatggtgacat 28390495  T
Q  293 atttttctgtaatttatacacatatctatatttttactcatatat 337  Q
    |||||||||||||| ||| | | ||||||||||||||||||||||    
T  28390496 atttttctgtaattcatatatacatctatatttttactcatatat 28390540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 342
Target Start/End: Complemental strand, 30485723 - 30485686
Alignment:
Q  305 tttatacacatatctatatttttactcatatatcaata 342  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  30485723 tttatacatatatctatatttttattcatatatcaata 30485686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 404 - 440
Target Start/End: Original strand, 11079726 - 11079762
Alignment:
Q  404 atttatacacatgtctatatttttattcatatatcaa 440  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  11079726 atttatacatatgtctatatttttattcaaatatcaa 11079762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 304 - 340
Target Start/End: Original strand, 28398549 - 28398585
Alignment:
Q  304 atttatacacatatctatatttttactcatatatcaa 340  Q
    |||||||||||| |||||||||||| |||||||||||    
T  28398549 atttatacacatgtctatatttttagtcatatatcaa 28398585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 291 - 342
Target Start/End: Complemental strand, 25735628 - 25735577
Alignment:
Q  291 atatttttctgtaatttatacacatatctatatttttactcatatatcaata 342  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  25735628 atatttttctgtaatttatacacgtatctatatttttactcatatattaata 25735577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 398 - 440
Target Start/End: Original strand, 49906845 - 49906887
Alignment:
Q  398 ttttacatttatacacatgtctatatttttattcatatatcaa 440  Q
    ||||| |||||||||| ||||||||||||||||||||||||||    
T  49906845 ttttaaatttatacacttgtctatatttttattcatatatcaa 49906887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 335
Target Start/End: Complemental strand, 25735504 - 25735471
Alignment:
Q  302 taatttatacacatatctatatttttactcatat 335  Q
    |||||||||||||| |||||||||||||||||||    
T  25735504 taatttatacacatgtctatatttttactcatat 25735471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 300 - 336
Target Start/End: Original strand, 39721981 - 39722017
Alignment:
Q  300 tgtaatttatacacatatctatatttttactcatata 336  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  39721981 tgtaatttatatacatgtctatatttttactcatata 39722017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 408 - 440
Target Start/End: Original strand, 39722098 - 39722130
Alignment:
Q  408 atacacatgtctatatttttattcatatatcaa 440  Q
    ||||||||| |||||||||||||||||||||||    
T  39722098 atacacatgcctatatttttattcatatatcaa 39722130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 303 - 343
Target Start/End: Original strand, 49906850 - 49906890
Alignment:
Q  303 aatttatacacatatctatatttttactcatatatcaatac 343  Q
    ||||||||||| | |||||||||||| ||||||||||||||    
T  49906850 aatttatacacttgtctatatttttattcatatatcaatac 49906890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 398 - 440
Target Start/End: Complemental strand, 24572117 - 24572075
Alignment:
Q  398 ttttacatttatacacatgtctatatttttattcatatatcaa 440  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  24572117 ttttccatttatacacatgtctatatttttattcatatatcaa 24572075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 398 - 440
Target Start/End: Complemental strand, 35765493 - 35765451
Alignment:
Q  398 ttttacatttatacacatgtctatatttttattcatatatcaa 440  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  35765493 ttttaaatttatacacatgtctatatttttattcatatatcaa 35765451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 294 - 342
Target Start/End: Complemental strand, 32743039 - 32742991
Alignment:
Q  294 tttttctgtaatttatacacatatctatatttttactcatatatcaata 342  Q
    ||||| |||||||||||||||| |||||| |||||||||||||| ||||    
T  32743039 tttttttgtaatttatacacatgtctatacttttactcatatattaata 32742991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 303 - 343
Target Start/End: Complemental strand, 35765488 - 35765448
Alignment:
Q  303 aatttatacacatatctatatttttactcatatatcaatac 343  Q
    ||||||||||||| |||||||||||| ||||||||||||||    
T  35765488 aatttatacacatgtctatatttttattcatatatcaatac 35765448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 343
Target Start/End: Complemental strand, 24572111 - 24572072
Alignment:
Q  304 atttatacacatatctatatttttactcatatatcaatac 343  Q
    |||||||||||| |||||||||||| ||||||||||||||    
T  24572111 atttatacacatgtctatatttttattcatatatcaatac 24572072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 437
Target Start/End: Complemental strand, 13216768 - 13216735
Alignment:
Q  404 atttatacacatgtctatatttttattcatatat 437  Q
    |||||||||||||||||||||||||||| |||||    
T  13216768 atttatacacatgtctatatttttattcgtatat 13216735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 404 - 440
Target Start/End: Original strand, 53840257 - 53840293
Alignment:
Q  404 atttatacacatgtctatatttttattcatatatcaa 440  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  53840257 atttatacacatgcctatattttaattcatatatcaa 53840293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 404 - 440
Target Start/End: Complemental strand, 72840 - 72804
Alignment:
Q  404 atttatacacatgtctatatttttattcatatatcaa 440  Q
    |||||||||||||||||||||||||||||||||||||    
T  72840 atttatacacatgtctatatttttattcatatatcaa 72804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 294 - 337
Target Start/End: Original strand, 37044081 - 37044124
Alignment:
Q  294 tttttctgtaatttatacacatatctatatttttactcatatat 337  Q
    ||||| |||||||||||||||| |||||||||||||||||||||    
T  37044081 tttttttgtaatttatacacatgtctatatttttactcatatat 37044124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 302 - 343
Target Start/End: Complemental strand, 72842 - 72801
Alignment:
Q  302 taatttatacacatatctatatttttactcatatatcaatac 343  Q
    |||||||||||||| |||||||||||| ||||||||||||||    
T  72842 taatttatacacatgtctatatttttattcatatatcaatac 72801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 404 - 437
Target Start/End: Original strand, 14976838 - 14976871
Alignment:
Q  404 atttatacacatgtctatatttttattcatatat 437  Q
    ||||||||||||||||||||||||||||||||||    
T  14976838 atttatacacatgtctatatttttattcatatat 14976871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 43488118 - 43488063
Alignment:
Q  192 atatttgtgagtgataaatataaataaaaaatacgagacaaatatttgtgagtgata 248  Q
    |||||||| | |||||||||||| ||||||||||| ||||||||||||| |||||||    
T  43488118 atatttgtcactgataaatataa-taaaaaatacgggacaaatatttgttagtgata 43488063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 437
Target Start/End: Original strand, 37044091 - 37044124
Alignment:
Q  404 atttatacacatgtctatatttttattcatatat 437  Q
    ||||||||||||||||||||||||| ||||||||    
T  37044091 atttatacacatgtctatatttttactcatatat 37044124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 335
Target Start/End: Original strand, 37044154 - 37044187
Alignment:
Q  302 taatttatacacatatctatatttttactcatat 335  Q
    |||||||||||||| |||||||||||||||||||    
T  37044154 taatttatacacatgtctatatttttactcatat 37044187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 280 - 345
Target Start/End: Original strand, 13694133 - 13694198
Alignment:
Q  280 aatatggtgacatatttttctgtaatttatacacatatctatatttttactcatatatcaatacgg 345  Q
    ||||||| |||  |||||| | ||||| |||||||| |||||||||||| ||||||||||||||||    
T  13694133 aatatggggaccgatttttttttaattgatacacatgtctatatttttattcatatatcaatacgg 13694198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 408 - 440
Target Start/End: Original strand, 13694161 - 13694193
Alignment:
Q  408 atacacatgtctatatttttattcatatatcaa 440  Q
    |||||||||||||||||||||||||||||||||    
T  13694161 atacacatgtctatatttttattcatatatcaa 13694193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 404 - 444
Target Start/End: Original strand, 25089836 - 25089876
Alignment:
Q  404 atttatacacatgtctatatttttattcatatatcaacatg 444  Q
    ||||||||| || |||||||||||| |||||||||||||||    
T  25089836 atttatacaaatctctatatttttactcatatatcaacatg 25089876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 304 - 340
Target Start/End: Original strand, 25089836 - 25089872
Alignment:
Q  304 atttatacacatatctatatttttactcatatatcaa 340  Q
    ||||||||| || ||||||||||||||||||||||||    
T  25089836 atttatacaaatctctatatttttactcatatatcaa 25089872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 415 - 457
Target Start/End: Original strand, 147234 - 147276
Alignment:
Q  415 tgtctatatttttattcatatatcaacatgaattcctaatttt 457  Q
    |||||||||||||||||||||||||||| || | |||||||||    
T  147234 tgtctatatttttattcatatatcaacacgagtacctaatttt 147276  T

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Target: scaffold0018; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 304 - 344
Target Start/End: Original strand, 147559 - 147599
Alignment:
Q  304 atttatacacatatctatatttttactcatatatcaatacg 344  Q
    |||||||||  |||||||||||||||| |||||||||||||    
T  147559 atttatacatgtatctatatttttacttatatatcaatacg 147599  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 343
Target Start/End: Complemental strand, 29064926 - 29064877
Alignment:
Q  294 tttttctgtaatttatacacatatctatatttttactcatatatcaatac 343  Q
    ||||| |||||||| |||| || |||||||||||| ||||||||||||||    
T  29064926 tttttttgtaatttgtacatatgtctatatttttattcatatatcaatac 29064877  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 343
Target Start/End: Complemental strand, 29119780 - 29119731
Alignment:
Q  294 tttttctgtaatttatacacatatctatatttttactcatatatcaatac 343  Q
    ||||| |||||||| |||| || |||||||||||| ||||||||||||||    
T  29119780 tttttttgtaatttgtacatatgtctatatttttattcatatatcaatac 29119731  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 300 - 336
Target Start/End: Original strand, 6261239 - 6261275
Alignment:
Q  300 tgtaatttatacacatatctatatttttactcatata 336  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  6261239 tgtaatttatatacatgtctatatttttactcatata 6261275  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 404 - 440
Target Start/End: Complemental strand, 29064916 - 29064880
Alignment:
Q  404 atttatacacatgtctatatttttattcatatatcaa 440  Q
    |||| |||| |||||||||||||||||||||||||||    
T  29064916 atttgtacatatgtctatatttttattcatatatcaa 29064880  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 404 - 440
Target Start/End: Complemental strand, 29119770 - 29119734
Alignment:
Q  404 atttatacacatgtctatatttttattcatatatcaa 440  Q
    |||| |||| |||||||||||||||||||||||||||    
T  29119770 atttgtacatatgtctatatttttattcatatatcaa 29119734  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 412 - 440
Target Start/End: Complemental strand, 5467671 - 5467643
Alignment:
Q  412 acatgtctatatttttattcatatatcaa 440  Q
    |||||||||||||||||||||||||||||    
T  5467671 acatgtctatatttttattcatatatcaa 5467643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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