View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5848_high_9 (Length: 407)
Name: NF5848_high_9
Description: NF5848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5848_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 12730913 - 12730744
Alignment:
| Q |
1 |
aataacccatttgagtaaaaaacactaaagaatattcatagcaagaaattcatattcaataacccatttgaacataaaccgctnnnnnnntattcatagc |
100 |
Q |
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| T |
12730913 |
aataacccatttgagtaaaaaacactaaagaatattcatagcaagaaattcatattcaataacccatttgagcataaaccgctaaaaaaatattcatagc |
12730814 |
T |
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| Q |
101 |
aagaacttcatattcaatgacccatttgagcaataaaccctaaaatcacggaattaacataaaaagtaat |
170 |
Q |
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| T |
12730813 |
aagaacttcatattcaatgacccatttgagcaataaaccctaaaatcgcggaattaacataaaaattaat |
12730744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 274 - 390
Target Start/End: Complemental strand, 12730655 - 12730538
Alignment:
| Q |
274 |
ttgacaaattaagccaaaaaatcactagatcatagcgaaaaaa-cataccttgagttacgtagcgcgattatggaagagaatagagtgagtttgatgaag |
372 |
Q |
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| T |
12730655 |
ttgacaaattaagccaaaaaatcactagatcatagcgaaaaaaacataccttgagttacgtagcgcgattatggaagagaatagagtgagtttgatgaag |
12730556 |
T |
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| Q |
373 |
tattgaaaaccctaattg |
390 |
Q |
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| T |
12730555 |
tattgaaaaccctaattg |
12730538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 133
Target Start/End: Complemental strand, 12730982 - 12730944
Alignment:
| Q |
95 |
catagcaagaacttcatattcaatgacccatttgagcaa |
133 |
Q |
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| T |
12730982 |
catagcaagaaattcatattcaatgacccatttgagcaa |
12730944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 12731020 - 12730948
Alignment:
| Q |
1 |
aataacccatttgagtaaaaaacacta--aagaatattcatagcaagaaattcatattcaataacccatttga |
71 |
Q |
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| T |
12731020 |
aataaaccatttcagcataaaacactagaaaaaatatgcatagcaagaaattcatattcaatgacccatttga |
12730948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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