View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5848_low_1 (Length: 808)
Name: NF5848_low_1
Description: NF5848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5848_low_1 |
 | |
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| [»] scaffold0419 (1 HSPs) |
| | |
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| [»] scaffold0277 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 311; Significance: 1e-175; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 26848260 - 26847942
Alignment:
| Q |
1 |
aaatcattgcagaaccattatctttctttgttacttcatgagagtaaaataatagtatatgaaataaaaataaatgttgttgtt-ctgatggaaaaagaa |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
26848260 |
aaatcattgcagaaccattatctttctttgttacttcatgagagtaaaataatagtatatgaaataaaaataaatgttgttgtttctgatggaaaaagaa |
26848161 |
T |
|
| Q |
100 |
aggttgagttaagggcatcacaatgaataaagagactaggtgatatttagaattttaggcctcgagaatcaaacagcttaataactaatgcatcaaaaaa |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26848160 |
aggttgagttaagggcatcacaatgaataaagagactaggtgatatttagaattttaggcctcgagaatcaaacagcttaataactaatgcatcaaaaaa |
26848061 |
T |
|
| Q |
200 |
gcgtaatattctctctcccattttaggcctctgcttttgtttggctctacacttttactatgtgagaaacttccttcctacttcctatcttccatgtaat |
299 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26848060 |
gcgtaatattctctctcccattttaggcctctgcttttgtttggctctacacttttactatgtgagaaacttccttcctacttcctatcttccatgtaat |
26847961 |
T |
|
| Q |
300 |
ttctgtaaagcaatgtgaa |
318 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
26847960 |
ttctgtaaagcaatgtgaa |
26847942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 477 - 791
Target Start/End: Complemental strand, 26847800 - 26847486
Alignment:
| Q |
477 |
aatataaaacagatttagtacaaactaaggaaggtgataaataggataggaagtaatatagttggcaaaatgcaacaaatgtaatcatgaaaaatcccta |
576 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26847800 |
aatataaaacagatttagtacaaactaaggaaggtgataaataggataggaagtaatatagttggcaaaatgcaacaaatgtaatcatgaaaaatcccta |
26847701 |
T |
|
| Q |
577 |
ttaatcttagagtttggtgctaattgtctttaaaattggattccaattcatgttgtactctatacagtaacttgatttctacagttggagtttgactcac |
676 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
26847700 |
ttaatcttagagtttggtgctaattgtctttaaaattggattccaattcatgttgtactctatacagtaacttgatttctacatttggagtttgactcac |
26847601 |
T |
|
| Q |
677 |
ctcttgtagattttacatcaagttttatttccataagtcctaacttaagctgacaaaaatgctcaagttataaggtcggacattgttgctgggatttaaa |
776 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26847600 |
ctcttgtagattttacatcaagttttatttccataagtcttaacttaagctgacaaaaatgctcaagttataaggtcggacattgttgctgggatttaaa |
26847501 |
T |
|
| Q |
777 |
ctctgattcctccac |
791 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
26847500 |
ctctgattcctccac |
26847486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 89 - 198
Target Start/End: Original strand, 27666597 - 27666706
Alignment:
| Q |
89 |
tggaaaaagaaaggttgagttaagggcatcacaatgaataaagagactaggtgatatttagaattttaggcctcgagaatcaaacagcttaataactaat |
188 |
Q |
| |
|
||||||||||||||||||||| | ||||||| ||||||| |||||||| ||||||||||||| || ||||||| | |||||||||||||||| |||||| |
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|
| T |
27666597 |
tggaaaaagaaaggttgagttgatggcatcagaatgaatcgagagactatgtgatatttagaacttcaggcctcaataatcaaacagcttaatcactaat |
27666696 |
T |
|
| Q |
189 |
gcatcaaaaa |
198 |
Q |
| |
|
|||| ||||| |
|
|
| T |
27666697 |
gcataaaaaa |
27666706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 27668832 - 27668899
Alignment:
| Q |
20 |
atctttctttgttacttcatgagagtaaaataatagtatatgaaataaaaataaatgttgttgttctg |
87 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
27668832 |
atctttctttgttacttcatgagagtaaaataacagtatatgaaataaaaataaatgtagttgttctg |
27668899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 231 - 291
Target Start/End: Original strand, 27669598 - 27669658
Alignment:
| Q |
231 |
tgcttttgtttggctctacacttttactatgtgagaaacttccttcctacttcctatcttc |
291 |
Q |
| |
|
||||||| ||||||||||||||||||| |||| |||||||||||||||| ||||||||||| |
|
|
| T |
27669598 |
tgcttttatttggctctacacttttaccatgtaagaaacttccttcctatttcctatcttc |
27669658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 26660892 - 26660834
Alignment:
| Q |
20 |
atctttctttgttacttcatgagagtaaaataatag--tatatgaaataaaaataaatg |
76 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||| |
|
|
| T |
26660892 |
atctttctttgttacttcatgagagtaaaataacagtatatataaaataaaaataaatg |
26660834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 26766863 - 26766805
Alignment:
| Q |
20 |
atctttctttgttacttcatgagagtaaaataatag--tatatgaaataaaaataaatg |
76 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||| |
|
|
| T |
26766863 |
atctttctttgttacttcatgagagtaaaataacagtatatataaaataaaaataaatg |
26766805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 74
Target Start/End: Complemental strand, 26809932 - 26809885
Alignment:
| Q |
27 |
tttgttacttcatgagagtaaaataatagtatatgaaataaaaataaa |
74 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
26809932 |
tttgttatttcattagagtaaaataatagtatatgaaatgaaaataaa |
26809885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 27667976 - 27668015
Alignment:
| Q |
20 |
atctttctttgttacttcatgagagtaaaataatagtata |
59 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
27667976 |
atctttctttgttacttcatgggactaaaataatagtata |
27668015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 388 - 418
Target Start/End: Complemental strand, 26847889 - 26847859
Alignment:
| Q |
388 |
tcatatagctaaaattactaaataaagcatc |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
26847889 |
tcatatagctaaaattactaaataaagcatc |
26847859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 637 - 703
Target Start/End: Original strand, 27672476 - 27672542
Alignment:
| Q |
637 |
tatacagtaacttgatttctacagttggagtttgactcacctcttgtagattttacatcaagtttta |
703 |
Q |
| |
|
|||||||||||||||| |||| | ||||||||||| | | |||||||||||| | ||| |||||||| |
|
|
| T |
27672476 |
tatacagtaacttgatatctatatttggagtttgatttatctcttgtagattcttcattaagtttta |
27672542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 206
Target Start/End: Complemental strand, 28790639 - 28790577
Alignment:
| Q |
144 |
atttagaattttaggcctcgagaatcaaacagcttaataactaatgcatcaaaaaagcgtaat |
206 |
Q |
| |
|
|||||||||||||| | | | ||||||||||||||||||||||||||| |||| ||| |||| |
|
|
| T |
28790639 |
atttagaattttagactacaaaaatcaaacagcttaataactaatgcattaaaacagcttaat |
28790577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 289 - 322
Target Start/End: Complemental strand, 26720101 - 26720068
Alignment:
| Q |
289 |
ttccatgtaatttctgtaaagcaatgtgaatatg |
322 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
|
|
| T |
26720101 |
ttccatgtaatttctgtaaagcaatgtgattatg |
26720068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 215
Target Start/End: Original strand, 27611554 - 27611603
Alignment:
| Q |
167 |
atcaaacagcttaataa-ctaatgcatcaaaaaagcgtaatattctctct |
215 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||| ||||||| ||||| |
|
|
| T |
27611554 |
atcaaacagcttaataaactaatgcatcaaaagagcttaatattatctct |
27611603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 28165515 - 28165573
Alignment:
| Q |
140 |
tgatatttagaattttaggcctcgagaatcaaacagcttaataactaatgcatcaaaaa |
198 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||| ||||||||| ||||||||||||| |
|
|
| T |
28165515 |
tgatatttagaattttagacctcataaatcaaacaacttaataaccaatgcatcaaaaa |
28165573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0419 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0419
Description:
Target: scaffold0419; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 206
Target Start/End: Complemental strand, 11782 - 11720
Alignment:
| Q |
144 |
atttagaattttaggcctcgagaatcaaacagcttaataactaatgcatcaaaaaagcgtaat |
206 |
Q |
| |
|
|||||||||||||| | | | ||||||||||||||||||||||||||| |||| ||| |||| |
|
|
| T |
11782 |
atttagaattttagactacaaaaatcaaacagcttaataactaatgcattaaaacagcttaat |
11720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: scaffold0277
Description:
Target: scaffold0277; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 206
Target Start/End: Original strand, 427 - 489
Alignment:
| Q |
144 |
atttagaattttaggcctcgagaatcaaacagcttaataactaatgcatcaaaaaagcgtaat |
206 |
Q |
| |
|
|||||||||||||| | | | ||||||||||||||||||||||||||| |||| ||| |||| |
|
|
| T |
427 |
atttagaattttagactacaaaaatcaaacagcttaataactaatgcattaaaacagcttaat |
489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 206
Target Start/End: Original strand, 9560 - 9622
Alignment:
| Q |
144 |
atttagaattttaggcctcgagaatcaaacagcttaataactaatgcatcaaaaaagcgtaat |
206 |
Q |
| |
|
|||||||||||||| | | | ||||||||||||||||||||||||||| |||| ||| |||| |
|
|
| T |
9560 |
atttagaattttagactacaaaaatcaaacagcttaataactaatgcattaaaacagcttaat |
9622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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