View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5848_low_10 (Length: 406)
Name: NF5848_low_10
Description: NF5848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5848_low_10 |
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| [»] scaffold0316 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 15 - 390
Target Start/End: Original strand, 6987671 - 6988046
Alignment:
| Q |
15 |
atcaggtgtccttcgtgattttggcaaaagttacattttgaaacttcaacaaaatcatgttaatgtgattttggtaaacgcacaaattgttgttgattta |
114 |
Q |
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| T |
6987671 |
atcaggtgtccttcgtgattttggcgaaagttacattttgaaacttcaacaaaatcatgttaatgtgattttggtaaacgcacaaattgttgttgattta |
6987770 |
T |
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| Q |
115 |
gaatataagaattataatatttgctgaaaaatgcatgtttcataaataatcagatttgtgagtcataagaaggacctgaggctcaaagtcctctgagaga |
214 |
Q |
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| T |
6987771 |
gaatataagaattataatatttgctgaaaaatgcatgtttcataaagaatcagatttgtgagtcataagaaggacctgaggctcaaagtcctctgagaga |
6987870 |
T |
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| Q |
215 |
agtatattagaagctttgatatctttgtgaataatccttctttgacatccctcatgcagatagtgaagaccctcagcagtccccaaagtaatcctatatc |
314 |
Q |
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| T |
6987871 |
agtatattagaagctttgatatctttgtgaataatccttctttgacatccctcatgcagatagtgaagaccctcagcagtccccaaagtaatcctatatc |
6987970 |
T |
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| Q |
315 |
taaggctccaattcagtttctctctaggtcctgaaatccataaaaggaaagaaatcaaccttaattaagtgattat |
390 |
Q |
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| T |
6987971 |
taaggctccaattcagtttctctctaggtcctgaaatccataaaaggaaagaaatcaaccttaattaagtgattat |
6988046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 74
Target Start/End: Complemental strand, 43598604 - 43598558
Alignment:
| Q |
28 |
cgtgattttggcaaaagttacattttgaaacttcaacaaaatcatgt |
74 |
Q |
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| T |
43598604 |
cgtgattttgacaaaaattatattttggaacttcaacaaaatcatgt |
43598558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0316 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0316
Description:
Target: scaffold0316; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 16069 - 16021
Alignment:
| Q |
27 |
tcgtgattttggcaaaagttacattttgaaacttcaacaaaatcatgtt |
75 |
Q |
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| T |
16069 |
tcgtgattttggcaaaagctacattttggaacttcaacaaaatcatgtt |
16021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 276
Target Start/End: Original strand, 40114138 - 40114226
Alignment:
| Q |
188 |
acctgaggctcaaagtcctctgagagaagtatattagaagctttgatatctttgtgaataatccttctttgacatccctcatgcagata |
276 |
Q |
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| T |
40114138 |
acctgaggctcaaagtcctctgtgagcaagatatttgcagcttttatatctctgtggataaatcttttttgacaaccctcatgaagata |
40114226 |
T |
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