View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5848_low_12 (Length: 395)
Name: NF5848_low_12
Description: NF5848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5848_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 175; Significance: 4e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 17 - 199
Target Start/End: Complemental strand, 27715799 - 27715617
Alignment:
| Q |
17 |
ataaatggcacatatgagaaacagttaatgtaggggagaagataaggaacaaatttcaaagccaaaatttgatcaacatgacatattctcaactcatgct |
116 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27715799 |
ataaatggcacataggagaaacagttaatgtaggggagaagataaggaacaaatttcaaagccaaaatttgatcaacatgacatattctcaactcatgct |
27715700 |
T |
|
| Q |
117 |
gctactgacaggcccgttaccgagtttttagtggcctaggatgaatctaaaatgtgagccttaagtttttattatgcgaagac |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
27715699 |
gctactgacaggcccgttaccgagtttttagtggcctaggatgaatctaaaatgtgagccttaagtttttattacgcgaagac |
27715617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University