View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5848_low_13 (Length: 394)
Name: NF5848_low_13
Description: NF5848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5848_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 6171453 - 6171076
Alignment:
| Q |
1 |
acataattagtagtatattattgtgagatttaaggaatatggaaaactaattaaaattcattatttcgtcatatcatctcacttttataagtcacatatt |
100 |
Q |
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| T |
6171453 |
acataattagtagtatattattgtgagatttaaggaatatggaaaactaattaaaattcattatttcgtcatatcatctcacttttataagtcacatatt |
6171354 |
T |
|
| Q |
101 |
tgatcaaatatttgtaattgttcatttgcctttatccnnnnnnnnn-tactgtaaaattgatttacatgaacattatatggctattaaactgtattttaa |
199 |
Q |
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| T |
6171353 |
tgatcaaatatttgtaattgttcatttgcctttatccaaaaaaaaaatactgtaaaattgatttacatgaacattatatggctattaaactgtattttaa |
6171254 |
T |
|
| Q |
200 |
ttaacatgtcatggattcaatcatgcaaataatatatcaacttatttggtcgtgtagtccatttaaatgtccctgaatgaattgatcttttttgcgaaat |
299 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6171253 |
ttaacatgtcatagattcaatcatgcaaataatatatcaacttatttggtcgtgtagtccatttaaatgtccctgaatgaattgatcttttttgcgaaat |
6171154 |
T |
|
| Q |
300 |
tggtgacggttgagcttgagcaacggccgatttaggttgtgtttgtttgtcgggtgtttggttttcgttgccctactg |
377 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6171153 |
tggtgacggttgagcttgagcaacgaccgatttaggttgtgtttgtttgtcgggtgtttggttttcgttgccctactg |
6171076 |
T |
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