View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5848_low_17 (Length: 353)
Name: NF5848_low_17
Description: NF5848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5848_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 6171446 - 6171775
Alignment:
| Q |
1 |
aattatgttgtctaatgcataaagttcaatatttctaattaataacgcaagttgtgttccttgtacctttgttcaacaaattgtacttgaattaacaacc |
100 |
Q |
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| T |
6171446 |
aattatgttgtctaatgcataaagttcaatatttctaattaatgtcgcaagttgtgttccttgtacctttgttcaacaaattgtacttgaattaacaacc |
6171545 |
T |
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| Q |
101 |
acacatggtctccaatttcaattgcttgtcctttctgcgacatccatctacttaagaaaatgcaaaacaaatagtaacacttatatgcttctcagcttca |
200 |
Q |
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| T |
6171546 |
acacatggtctccaatttcaattgcttgtcctttctgcgacattcatctacttaagaaaatgcaaaacaaattgtaacacttatatgcttctcagcttca |
6171645 |
T |
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| Q |
201 |
acaataccaaacttcaataataccaaatagcttcacaatttttctaagcatcttcattcgacaatccatctccaatcaaaatacaataacaaatttacat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6171646 |
acaataccaaacttcaataataccaaatagcttcacaatttttctaagcatcttcattcgacaatccatctccaatcaaaatacaataacaaatttacat |
6171745 |
T |
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| Q |
301 |
ctctaatttactcttgatatgagaccctcc |
330 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
6171746 |
ctctaatttactcttgatatgagaccctcc |
6171775 |
T |
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