View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5848_low_18 (Length: 319)
Name: NF5848_low_18
Description: NF5848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5848_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 4528368 - 4528665
Alignment:
| Q |
1 |
actcatttgtgagtaaagatgaagttattggaagagatgaggaaaagaaatgtattaaaagttatctactagatgtcaatgcaacagataatgtttctat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
4528368 |
actcatttgtgagtaaagatgaagttattggaagagatgaggaaaagagatgtattaaaagttatctactagatgacaatgcaacaaataatgtttctat |
4528467 |
T |
|
| Q |
101 |
aattcccatagttggcattggaggattaggtaagactgcacttgctcaactagtctacaatgataatgatgttcaaaggtattttgagctaaaaatgtgg |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4528468 |
aattcccatagttgggattggaggattaggtaagactgcacttgctcaacttgtctacaatgataatgatgttcaaaggtattttgagctaaaaatgtgg |
4528567 |
T |
|
| Q |
201 |
gtgtatgtctcggatgaatttgatataaagaaaatatctcgggagatcgttggggatgaaaagaatagtcagatggagcaagtgcaacaacaacttcg |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4528568 |
gtgtatgtctcggatgaatttgatataaagaaaatatctcgggagatcgttggggatgaaaagaatagtcagatggagcaagtgcaacaacaacttcg |
4528665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 4399525 - 4399230
Alignment:
| Q |
1 |
actcatttgtgagtaaagatgaagttattggaagagatgaggaaaagaaatgtattaaaagttatctactagatgtcaatgcaacagataatgtttctat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
4399525 |
actcatttgtgagtaaagatgaagttattggaagagatgaggaaaagaaatgtattaaaagttatctactagatgacaatgcaacaaataatgtttctat |
4399426 |
T |
|
| Q |
101 |
aattcccatagttggcattggaggattaggtaagactgcacttgctcaactagtctacaatgataatgatgttcaaaggtattttgagctaaaaatgtgg |
200 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4399425 |
aattcccatagttgggattggaggattaggtaagactgcacttgctcaactagtctacaatgataatgatgttcaaagccattttgagctaaaaatgtgg |
4399326 |
T |
|
| Q |
201 |
gtgtatgtctcggatgaatttgatataaagaaaatatctcgggagatcgttggggatgaaaagaatagtcagatggagcaagtgcaacaacaactt |
296 |
Q |
| |
|
||| ||||||||||| ||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||| ||||| ||||| |||||| |
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| T |
4399325 |
gtgcatgtctcggataaatttgatataaagaaaatatcttgggatatcattggggatgaaaagaatagtcagatggatcaagtacaacagcaactt |
4399230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 4497117 - 4497412
Alignment:
| Q |
1 |
actcatttgtgagtaaagatgaagttattggaagagatgaggaaaagaaatgtattaaaagttatctactagatgtcaatgcaacagataatgtttctat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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|
| T |
4497117 |
actcatttgtgagtaaagatgaagttattggaagagatgaggaaaagaaatgtattaaaagttatctactagatgacaatgcaacaaataatgtttctat |
4497216 |
T |
|
| Q |
101 |
aattcccatagttggcattggaggattaggtaagactgcacttgctcaactagtctacaatgataatgatgttcaaaggtattttgagctaaaaatgtgg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||| |
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|
| T |
4497217 |
aattcccatagttggcattggaggattaggtaagactgcacttgctcaacttgtctacaatgataatgatgttcaagggcattttgagctaaaaatgtgg |
4497316 |
T |
|
| Q |
201 |
gtgtatgtctcggatgaatttgatataaagaaaatatctcgggagatcgttggggatgaaaagaatagtcagatggagcaagtgcaacaacaactt |
296 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||| |||| ||||||||||| ||||| |||||| |
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|
| T |
4497317 |
gtgcatgtctcggatgaatttgatataaagaaaatatctagggatatcattggggatgaaaagaacggtcaaatggagcaagtacaacagcaactt |
4497412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 12 - 296
Target Start/End: Original strand, 4518188 - 4518472
Alignment:
| Q |
12 |
agtaaagatgaagttattggaagagatgaggaaaagaaatgtattaaaagttatctactagatgtcaatgcaacagataatgtttctataattcccatag |
111 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||| |
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|
| T |
4518188 |
agtacagatgaagttattggaagaaatgaggaaaagaaatgtattaaaagttatctactagatgacaatgcaacaaataatgtttctatagttcccatag |
4518287 |
T |
|
| Q |
112 |
ttggcattggaggattaggtaagactgcacttgctcaactagtctacaatgataatgatgttcaaaggtattttgagctaaaaatgtgggtgtatgtctc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
4518288 |
ttggcattggaggattaggtaagactgcacttgctcaactagtctacaatgataatgatgttcaaaagcattttgagctaaaaatgtgggtgtatgtctc |
4518387 |
T |
|
| Q |
212 |
ggatgaatttgatataaagaaaatatctcgggagatcgttggggatgaaaagaatagtcagatggagcaagtgcaacaacaactt |
296 |
Q |
| |
|
||||||||||||| | ||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||| |||||||||||| |
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|
| T |
4518388 |
ggatgaatttgatttgaagaaaatatctcgggatatcattggggatgaaaagaatagtcaaatggagcaagtacaacaacaactt |
4518472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 18045801 - 18046096
Alignment:
| Q |
1 |
actcatttgtgagtaaagatgaagttattggaagagatgaggaaaagaaatgtattaaaagttatctactagatgtcaatgcaacagataatgtttctat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
18045801 |
actcatttgtgagtaaagatgaagttattggaagagatgaggaaaagaaatgtattaaaagttatctactagatgacaatgcaacaaataatgtttctat |
18045900 |
T |
|
| Q |
101 |
aattcccatagttggcattggaggattaggtaagactgcacttgctcaactagtctacaatgataatgatgttcaaaggtattttgagctaaaaatgtgg |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
18045901 |
aattcccatagttgggattggaggattaggtaagactgcacttgctcaactagtctacaatgataatgatgttcaaagccattttgagctaaaaatgtgg |
18046000 |
T |
|
| Q |
201 |
gtgtatgtctcggatgaatttgatataaagaaaatatctcgggagatcgttggggatgaaaagaatagtcagatggagcaagtgcaacaacaactt |
296 |
Q |
| |
|
||| ||||||||||| ||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||| ||||| ||||| |||||| |
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|
| T |
18046001 |
gtgcatgtctcggataaatttgatataaagaaaatatcttgggatatcattggggatgaaaagaatagtcagatggatcaagtacaacagcaactt |
18046096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 18035352 - 18035057
Alignment:
| Q |
1 |
actcatttgtgagtaaagatgaagttattggaagagatgaggaaaagaaatgtattaaaagttatctactagatgtcaatgcaacagataatgtttctat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
18035352 |
actcatttgtgagtaaagatgaagttattggaagagatgaggaaaagaaatgtattaaaagttatctactagatgacaatgcaacaaataatgtttctat |
18035253 |
T |
|
| Q |
101 |
aattcccatagttggcattggaggattaggtaagactgcacttgctcaactagtctacaatgataatgatgttcaaaggtattttgagctaaaaatgtgg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
18035252 |
aattcccatagttggcattggaggattaggtaagactgcacttgctcaacttgtctacaatgataatgatgttcaagggcattttgagctaaaaatgtgg |
18035153 |
T |
|
| Q |
201 |
gtgtatgtctcggatgaatttgatataaagaaaatatctcgggagatcgttggggatgaaaagaatagtcagatggagcaagtgcaacaacaactt |
296 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||| |||| ||||||||||| ||||| |||||| |
|
|
| T |
18035152 |
gtgcatgtctcggatgaatttgatataaagaaaatatctagggatatcattggggatgaaaagaacggtcaaatggagcaagtacaacagcaactt |
18035057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 163
Target Start/End: Complemental strand, 7129095 - 7129022
Alignment:
| Q |
90 |
aatgtttctataattcccatagttggcattggaggattaggtaagactgcacttgctcaactagtctacaatga |
163 |
Q |
| |
|
|||||||| || ||| | ||| |||| ||||||||| | || |||||||||||||||||||| || |||||||| |
|
|
| T |
7129095 |
aatgtttcaattatttctataattggaattggaggacttggaaagactgcacttgctcaacttgtatacaatga |
7129022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 163
Target Start/End: Original strand, 7482043 - 7482116
Alignment:
| Q |
90 |
aatgtttctataattcccatagttggcattggaggattaggtaagactgcacttgctcaactagtctacaatga |
163 |
Q |
| |
|
|||||||| || ||| | ||| |||| ||||||||| | || |||||||||||||||||||| || |||||||| |
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|
| T |
7482043 |
aatgtttcaattatttctataattggaattggaggacttggaaagactgcacttgctcaacttgtatacaatga |
7482116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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