View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5848_low_19 (Length: 308)
Name: NF5848_low_19
Description: NF5848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5848_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 15 - 291
Target Start/End: Complemental strand, 11585661 - 11585385
Alignment:
| Q |
15 |
tatgagatgggagaggtatcaaaacggagctagcaacaataacaatgaatggatcatttgacagaaataagtttctgttttttcgaatcgaaaacctaac |
114 |
Q |
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|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11585661 |
tatgagatgggagaggtaacgaaacggagctagcaacaataacaatgaatggatcatttgacagaaataagtttctattttttcgaatcgaaaacctaac |
11585562 |
T |
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| Q |
115 |
cccgctatcatcagtatcagcaatgtattgtggtaaatctgatttgcttgagattgttaaatttttactgaactccttaaccacctcatgtgcaagtttc |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
11585561 |
cccgctatcatcagtatcagcaatgtattgtggtaaatctgatttgcttgacattgttaaatttttactgaactccttaagcacctgatgtgcaagtttc |
11585462 |
T |
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| Q |
215 |
attacacatctccttccttctggtaaagtaatcactgaaaagtatataaatgaataaattacacatatttcaactaa |
291 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
11585461 |
attacacatctctttccttctggtaaagtaatcactgaaaagtatataaatgaataaatcacacatatttcaactaa |
11585385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 15 - 291
Target Start/End: Complemental strand, 11597837 - 11597561
Alignment:
| Q |
15 |
tatgagatgggagaggtatcaaaacggagctagcaacaataacaatgaatggatcatttgacagaaataagtttctgttttttcgaatcgaaaacctaac |
114 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
11597837 |
tatgagatgggagaggtaaggaaacggagctagcaacaataacaatgaatggatcatttgacagaaataagtttctattttttggaatcgaaaacctaac |
11597738 |
T |
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| Q |
115 |
cccgctatcatcagtatcagcaatgtattgtggtaaatctgatttgcttgagattgttaaatttttactgaactccttaaccacctcatgtgcaagtttc |
214 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
11597737 |
cccgctatcatcggtatcagcaatgtattgtggtaaatctgatttgcttgacattgttaaatttttactgaactccttaagcacctgatgtgcaagtttc |
11597638 |
T |
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| Q |
215 |
attacacatctccttccttctggtaaagtaatcactgaaaagtatataaatgaataaattacacatatttcaactaa |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
11597637 |
attacacatctccttccttctggtaaagtaatcactgaaaagtatataaatgaataaatcacacatatttcaactaa |
11597561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 13 - 156
Target Start/End: Complemental strand, 11608913 - 11608770
Alignment:
| Q |
13 |
aatatgagatgggagaggtatcaaaacggagctagcaacaataacaatgaatggatcatttgacagaaataagtttctgttttttcgaatcgaaaaccta |
112 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
11608913 |
aatatgagatgggagaggtatcgaaacggagctagcaacaataacaatgaatggatcatttgacagaaataagtttttgttttttggaatcgaaaaccta |
11608814 |
T |
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| Q |
113 |
accccgctatcatcagtatcagcaatgtattgtggtaaatctga |
156 |
Q |
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| T |
11608813 |
accccgctatcatcagtatcagcaatgtattgtggtaaatctga |
11608770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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