View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5848_low_2 (Length: 680)
Name: NF5848_low_2
Description: NF5848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5848_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-147; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 16 - 361
Target Start/End: Original strand, 40179689 - 40180021
Alignment:
| Q |
16 |
atagagggtagcagtaactcttttgcaaccacaagcatgcatgtcatgttttaaaaagataattcttcaaactattgtagtccacaaatcacaacaaaag |
115 |
Q |
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| T |
40179689 |
atagagggtagtagtaactcttttgcaaccacaagcatgcatgtcatgttttaaattgataattcttcaaactattgtagtccacagatcacaa---aag |
40179785 |
T |
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| Q |
116 |
ccgcagctaaataatgtgattaccattcagtcattcaccaacataatactacattcaaagcatcaccttgaactaccttcctggaatgttgaaactgtca |
215 |
Q |
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| T |
40179786 |
ccgcagctaaataatgtggttaccattcagtcattcaccaacataatactacattcaaagtatcaccttgaactaccttcctgaaatgttgaaactgtca |
40179885 |
T |
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| Q |
216 |
atggttcaaaattatattgccaagcaacataacatgctctacaacacaatcactgtgaaaagccaattttaagcaatgtcaagcaaaacatcacatcata |
315 |
Q |
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| T |
40179886 |
atggttcaaaattatattgccaagcaacataacatgctctacaacacaatcactgtgaaaagc----------caatgtcaagcaaaacatcacatcata |
40179975 |
T |
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| Q |
316 |
tattcagttgaacaaaagctttcacacgaagttcaatgcatcacat |
361 |
Q |
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| T |
40179976 |
tattcagttgaacaaaagctttcacacgaagttcaatgcaccacat |
40180021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 393 - 680
Target Start/End: Original strand, 40180015 - 40180298
Alignment:
| Q |
393 |
accacattttttgacacaaatctggaaataaataatccattcgctttcatcaaattgaatacgcagcaataacaaacttcaattttaaaaagagtcataa |
492 |
Q |
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| T |
40180015 |
accacattttttgacacaaatctggaaataaataatccattcgctttcatcaaattgaatacgcagcaataacaaacttcaattttaaaaagagtcataa |
40180114 |
T |
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| Q |
493 |
taatcttattcacgaaaagcacaaataaagaaaggaacattaaaattcaaatccaacattataaatctacattcttcattnnnnnnnnnnncaaattaaa |
592 |
Q |
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| T |
40180115 |
taatcttattcacgaaaaccacaaataaagaaaggaacattaaaattcaaatccaccattataaatctacattcttcatttaaaaaaa----aatttaaa |
40180210 |
T |
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| Q |
593 |
catcaatttattataaactaaaccctaaatcaacgaaaaagggaataaacagaaaacaatgaaatcaagagctagtgaatttggtaac |
680 |
Q |
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| T |
40180211 |
catcaatttattataaactaaacactaaatcaacgaaaaagggaataaacagaaaataatgaaatcaagagctggtgaatttggtaac |
40180298 |
T |
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