View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5848_low_25 (Length: 249)
Name: NF5848_low_25
Description: NF5848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5848_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 1453549 - 1453780
Alignment:
| Q |
1 |
gagccactgattattgacagaaaactctattgcacgttcatgccatgtgtatagaaacataaaattaaaacctagctaagagacagaatttgcatatcat |
100 |
Q |
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| T |
1453549 |
gagccactgattattgacagaaaactctattgca------tgccatgtgtatagaaacataaaattaaaacctagctaagagacagaatttgcatatcat |
1453642 |
T |
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| Q |
101 |
cgttataaaacctatatatataaatagtagatcattataaaactcgaaatctagacctccacacgacgtcgtttctcctctgtcactcacagaggaaaca |
200 |
Q |
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| T |
1453643 |
cgttataaaacctatatatataaatagtagatcattataaaactcgaaatctagacctccacacgacgtcgtttctcctctgtcactcacagaggaaaca |
1453742 |
T |
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| Q |
201 |
acctccactaagagggggatcattgttattaagatatt |
238 |
Q |
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| T |
1453743 |
acctccactaagagggggatcattgttattaagatatt |
1453780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 6 - 157
Target Start/End: Original strand, 1454836 - 1454984
Alignment:
| Q |
6 |
actgattattgacagaaaactctattgcacgttcatgccatgtgtatagaaacataaaattaaaacctagctaagagacagaatttgcatatcatcgtta |
105 |
Q |
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|||| ||||||| ||||||||| | | ||| |||||| |||||| |||||||||| ||| ||||||||| | ||||||||||||||||||| ||||| |
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| T |
1454836 |
actgtttattgatagaaaactcaagtacacattcatggcatgtgcatagaaacatcaaactaaaaccta----atagacagaatttgcatatcaacgtta |
1454931 |
T |
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| Q |
106 |
taaaa-cctatatatataaatagtagatcattataaaactcgaaatctagacc |
157 |
Q |
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|||| |||| | ||||||||||||||||||||||||||| |||||||||||| |
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| T |
1454932 |
aaaaaacctaaacatataaatagtagatcattataaaacttgaaatctagacc |
1454984 |
T |
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