View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5848_low_28 (Length: 232)
Name: NF5848_low_28
Description: NF5848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5848_low_28 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 123; Significance: 2e-63; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 110 - 232
Target Start/End: Original strand, 6170977 - 6171099
Alignment:
| Q |
110 |
cgaagagatataaactccaacgtgcaaaggttaaagagggagaccgcaacttaaaaacaccaatagcaaaaactcgtgagtaccagagcaagacataacc |
209 |
Q |
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| T |
6170977 |
cgaagagatataaactccaacgtgcaaaggttaaagagggagaccgcaacttaaaaacaccaatagcaaaaactcgtgagtaccagagcaagacataacc |
6171076 |
T |
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| Q |
210 |
agtagggcaacgaaaaccaaaca |
232 |
Q |
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| T |
6171077 |
agtagggcaacgaaaaccaaaca |
6171099 |
T |
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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 6170868 - 6170904
Alignment:
| Q |
1 |
tcatctgcatttttttaattataaacaaaatatacat |
37 |
Q |
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|||| |||||||||||||||||||||||||||||||| |
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| T |
6170868 |
tcatatgcatttttttaattataaacaaaatatacat |
6170904 |
T |
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