View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5848_low_31 (Length: 218)

Name: NF5848_low_31
Description: NF5848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5848_low_31
NF5848_low_31
[»] chr2 (6 HSPs)
chr2 (3-81)||(11608892-11608972)
chr2 (5-74)||(11585644-11585713)
chr2 (5-74)||(11597820-11597889)
chr2 (158-197)||(11609043-11609082)
chr2 (161-197)||(11585797-11585833)
chr2 (161-197)||(11597973-11598009)


Alignment Details
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 11608892 - 11608972
Alignment:
Q  3 gatacctctcccatctcatattgttttcgacttcttaaga--gatcctgcaagacgttttgaggttcaaagaattttagtt 81  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  11608892 gatacctctcccatctcatattgttttcgacttcttaagatcgatcctgcaagacgttttgaggttcaaagaattttagtt 11608972  T

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Target: chr2; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 11585644 - 11585713
Alignment:
Q  5 tacctctcccatctcatattgttttcgacttcttaagagatcctgcaagacgttttgaggttcaaagaat 74  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11585644 tacctctcccatctcatactgttttcgacttcttaagagatcctgcaagacgttttgaggttcaaagaat 11585713  T

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Target: chr2; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 11597820 - 11597889
Alignment:
Q  5 tacctctcccatctcatattgttttcgacttcttaagagatcctgcaagacgttttgaggttcaaagaat 74  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11597820 tacctctcccatctcatactgttttcgacttcttaagagatcctgcaagacgttttgaggttcaaagaat 11597889  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 158 - 197
Target Start/End: Original strand, 11609043 - 11609082
Alignment:
Q  158 catgcagtgggataagttttgtgacggaaatccatggcat 197  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  11609043 catgcagtgggataagttttgtgacggaaatccatggcat 11609082  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 11585797 - 11585833
Alignment:
Q  161 gcagtgggataagttttgtgacggaaatccatggcat 197  Q
    |||||||||||||||||||||||||||||||||||||    
T  11585797 gcagtgggataagttttgtgacggaaatccatggcat 11585833  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 11597973 - 11598009
Alignment:
Q  161 gcagtgggataagttttgtgacggaaatccatggcat 197  Q
    |||||||||||||||||||||||||||||||||||||    
T  11597973 gcagtgggataagttttgtgacggaaatccatggcat 11598009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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