View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5848_low_32 (Length: 215)
Name: NF5848_low_32
Description: NF5848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5848_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 53072948 - 53073159
Alignment:
| Q |
1 |
tttccaacgtctttgcatcataaagagctctccctcagtact-------ttttgctcctttggcttcttcccatggagaagttttctttttattgtattg |
93 |
Q |
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| T |
53072948 |
tttccaacgtctttgcatcataaagagctctccctcagtactttctactttttgctcctttggcttcttcccatggagaagttttctttttattgtattg |
53073047 |
T |
|
| Q |
94 |
atgaaataagaaacaccaaagggcgaggttattatttgagatacatcaaatcaaacagcaaaagaatagttttatgaaaataggattaggttgagttacc |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53073048 |
atgaaataagaaacaccaaagggcgaggttattatttgagatacatcaaatcaaacagcaaaagaatagttttatgaaaataggattaggttgagttacc |
53073147 |
T |
|
| Q |
194 |
catttgtgatga |
205 |
Q |
| |
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|||||||||||| |
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| T |
53073148 |
catttgtgatga |
53073159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 39 - 201
Target Start/End: Original strand, 53066079 - 53066239
Alignment:
| Q |
39 |
tactttttgctcctttggcttcttcccatggagaagttttctttttattgtattgatgaaataagaaacaccaaagggcgaggttattatttgagataca |
138 |
Q |
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||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||| |||||| ||||||||||| || |
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| T |
53066079 |
tactttttgctccttccgcttcttcccatgaagaagttttctttctattgtattgatgaaataagaaac--caaagggtgaggttgttatttgagattca |
53066176 |
T |
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| Q |
139 |
tcaaatcaaacagcaaaagaatagttttatgaaaataggattaggttgagttacccatttgtg |
201 |
Q |
| |
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|| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
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| T |
53066177 |
tcgaatcaaacagcaaaagaataattttatgaaaataggattaggttgaattacccatttgtg |
53066239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 39 - 199
Target Start/End: Complemental strand, 53331242 - 53331081
Alignment:
| Q |
39 |
tactttttgctcctttggcttcttcccatggagaagttttctttttattgtattgatgaaataagaaaca-ccaaagggcgaggttattatttgagatac |
137 |
Q |
| |
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||||| ||||||||| |||||||| |||| ||||||||||||| ||||||||||||||||||| || | |||||||| || ||||||||||||||| | |
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| T |
53331242 |
tacttcttgctccttccgcttcttctcatgaagaagttttctttctattgtattgatgaaataataagaatccaaagggtgaagttattatttgagattc |
53331143 |
T |
|
| Q |
138 |
atcaaatcaaacagcaaaagaatagttttatgaaaataggattaggttgagttacccatttg |
199 |
Q |
| |
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||||||||||||||||||| |||| || |||||||||||||||||||||| ||||||||||| |
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| T |
53331142 |
atcaaatcaaacagcaaaataatacttgtatgaaaataggattaggttgaattacccatttg |
53331081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 39 - 199
Target Start/End: Complemental strand, 53334926 - 53334765
Alignment:
| Q |
39 |
tactttttgctcctttggcttcttcccatggagaagttttctttttattgtattgatgaaataagaaaca-ccaaagggcgaggttattatttgagatac |
137 |
Q |
| |
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||||| ||||||||| |||||||| |||| ||||||||||||| ||||||||||||||||||| || | |||||||| || ||||||||||||||| | |
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| T |
53334926 |
tacttcttgctccttccgcttcttctcatgaagaagttttctttctattgtattgatgaaataataagaatccaaagggtgaagttattatttgagattc |
53334827 |
T |
|
| Q |
138 |
atcaaatcaaacagcaaaagaatagttttatgaaaataggattaggttgagttacccatttg |
199 |
Q |
| |
|
||||||||||||||||||| |||| || |||||||||||||||||||||| ||||||||||| |
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|
| T |
53334826 |
atcaaatcaaacagcaaaataatacttgtatgaaaataggattaggttgaattacccatttg |
53334765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 39 - 199
Target Start/End: Complemental strand, 53338603 - 53338442
Alignment:
| Q |
39 |
tactttttgctcctttggcttcttcccatggagaagttttctttttattgtattgatgaaataagaaaca-ccaaagggcgaggttattatttgagatac |
137 |
Q |
| |
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||||| ||||||||| |||||||| |||| ||||||||||||| ||||||||||||||||||| || | |||||||| || ||||||||||||||| | |
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| T |
53338603 |
tacttcttgctccttccgcttcttctcatgaagaagttttctttctattgtattgatgaaataataagaatccaaagggtgaagttattatttgagattc |
53338504 |
T |
|
| Q |
138 |
atcaaatcaaacagcaaaagaatagttttatgaaaataggattaggttgagttacccatttg |
199 |
Q |
| |
|
||||||||||||||||||| |||| || |||||||||||||||||||||| ||||||||||| |
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|
| T |
53338503 |
atcaaatcaaacagcaaaataatacttgtatgaaaataggattaggttgaattacccatttg |
53338442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 39 - 199
Target Start/End: Complemental strand, 53363482 - 53363321
Alignment:
| Q |
39 |
tactttttgctcctttggcttcttcccatggagaagttttctttttattgtattgatgaaataagaaaca-ccaaagggcgaggttattatttgagatac |
137 |
Q |
| |
|
||||||||||||||| ||||||||||| | ||||||||| ||| ||||||||||||||||||| || | || ||||| || ||||||||||||||| | |
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| T |
53363482 |
tactttttgctccttccgcttcttcccaagaagaagttttttttctattgtattgatgaaataataagaatccgaagggtgaagttattatttgagattc |
53363383 |
T |
|
| Q |
138 |
atcaaatcaaacagcaaaagaatagttttatgaaaataggattaggttgagttacccatttg |
199 |
Q |
| |
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|||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||| |
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|
| T |
53363382 |
atcaaatcaaacagcaaaagaatacttgtatgaaaataggattaggttgaattacccatttg |
53363321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 74
Target Start/End: Original strand, 53066025 - 53066060
Alignment:
| Q |
39 |
tactttttgctcctttggcttcttcccatggagaag |
74 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
53066025 |
tactttttgctcctttggcttcttcccatggagaag |
53066060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 74
Target Start/End: Complemental strand, 53331296 - 53331261
Alignment:
| Q |
39 |
tactttttgctcctttggcttcttcccatggagaag |
74 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
53331296 |
tactttttgctcctttggcttcttcccatggagaag |
53331261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 74
Target Start/End: Complemental strand, 53334980 - 53334945
Alignment:
| Q |
39 |
tactttttgctcctttggcttcttcccatggagaag |
74 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
53334980 |
tactttttgctcctttggcttcttcccatggagaag |
53334945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 74
Target Start/End: Complemental strand, 53338657 - 53338622
Alignment:
| Q |
39 |
tactttttgctcctttggcttcttcccatggagaag |
74 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
53338657 |
tactttttgctcctttggcttcttcccatggagaag |
53338622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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