View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5848_low_33 (Length: 211)
Name: NF5848_low_33
Description: NF5848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5848_low_33 |
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Alignment Details
Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 32 - 189
Target Start/End: Complemental strand, 29025194 - 29025037
Alignment:
| Q |
32 |
tgtaggtatcatacgaaaaacaaaaactataagagaatgcttgcatcgtttctgcggagagtgcatagagaagtgcatgcgctctgggtttgtctataaa |
131 |
Q |
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| T |
29025194 |
tgtaggtatcttacggaaaacaaaaactataagaaaatgcttgcatcgtttctgcggagagtgcatagagaagtgcatgcgctctgggtttgtccataaa |
29025095 |
T |
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| Q |
132 |
cttcaaccatctttacttatcaatatttcacatatttttagtttgaactgtattgatt |
189 |
Q |
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| T |
29025094 |
cttcaaccatctttacttatcaatatttcacatatttttagtttgaactgtattgatt |
29025037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 26 - 193
Target Start/End: Complemental strand, 36067873 - 36067706
Alignment:
| Q |
26 |
tatatgtgtaggtatcatacgaaaaacaaaaactataagagaatgcttgcatcgtttctgcggagagtgcatagagaagtgcatgcgctctgggtttgtc |
125 |
Q |
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| T |
36067873 |
tatatgtgtaggaatcattcggaaaacaaaaactataagagaatgtctgcatcgtttctgcgaagagtgcataaacaagtgcatgcgctttgggtttttc |
36067774 |
T |
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| Q |
126 |
tataaacttcaaccatctttacttatcaatatttcacatatttttagtttgaactgtattgattattt |
193 |
Q |
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| T |
36067773 |
cttgaacttccaccatatttacttatcaatattttacatatttttagtttgaactgtgttgattattt |
36067706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 128 - 185
Target Start/End: Complemental strand, 35152147 - 35152090
Alignment:
| Q |
128 |
taaacttcaaccatctttacttatcaatatttcacatatttttagtttgaactgtatt |
185 |
Q |
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| T |
35152147 |
taaacttccaccatctttacttatcaatatttcacatatttttagtttggattgtatt |
35152090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 21548073 - 21547987
Alignment:
| Q |
26 |
tatatgtgtaggtatcatacgaaaaacaaaaactataagagaatgcttgcatcgtttctgcggagagtgcatagagaagtgcatgcg |
112 |
Q |
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| T |
21548073 |
tatatgtgtaggcatcattcgaaaaacaagaacttcaatggaatgcatgcatcgcttttgcaaagtgtgcatagacaagtgcatgcg |
21547987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 100
Target Start/End: Complemental strand, 35139848 - 35139774
Alignment:
| Q |
26 |
tatatgtgtaggtatcatacgaaaaacaaaaactataagagaatgcttgcatcgtttctgcggagagtgcataga |
100 |
Q |
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| T |
35139848 |
tatatgtgtaggcatcattcgaaaaacaagaaccgtaatggagtgcttgcatcgcttttgcagagagtgcataga |
35139774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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