View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5848_low_34 (Length: 210)
Name: NF5848_low_34
Description: NF5848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5848_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 42235415 - 42235584
Alignment:
| Q |
19 |
gctcttgtaatggaagagaagacagagattcgcaccaaacaaacagaaacataagtaaaaggaaacacaaacattttcggaaattgtcggggaactataa |
118 |
Q |
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| T |
42235415 |
gctcttgtaatggaagagaagacagagattcgcaccaaacaaacagaaacataagtaaaaggaaacacaaacatttttggaaattgtcggggaactataa |
42235514 |
T |
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| Q |
119 |
cgagctatacatactattttaggagggactaaatattatattttatttatggattaaaaataatttatcc |
188 |
Q |
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| T |
42235515 |
cgagctatacatactattttaggagggactaaatattatattatatttatggattaataatgatttatcc |
42235584 |
T |
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