View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5848_low_5 (Length: 520)
Name: NF5848_low_5
Description: NF5848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5848_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 405; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 15 - 431
Target Start/End: Complemental strand, 35523291 - 35522875
Alignment:
| Q |
15 |
cacagacactagatacgacaataacattaacattaggcataatttaagaaaatgaatttaatcacatgtgtcggtgctacatagctgattagcactcacc |
114 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35523291 |
cacaaacactagatacgacaataacattaacattaggcataatttaagaaaatgaatttaatcacatgtgtcggtgctacatagctgattagcactcacc |
35523192 |
T |
|
| Q |
115 |
tttgtgtaaaagtccggaggagagaatgtatcaaagtgtgttttgctaaaatctgagttccacccatttcccatatatactttcacctatagatagaaat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35523191 |
tttgtgtaaaagtccggaggagagaatgtatcaaagtgtgttttgctaaaatctgagttccacccatttcccatgtatactttcacctatagatagaaat |
35523092 |
T |
|
| Q |
215 |
gagagaatttcaaaatatgtcaacaaatagatggatttccttccaaaataatatctcaccttcaatgtcttcttcactggcagtgttcttttaggatcaa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35523091 |
gagagaatttcaaaatatgtcaacaaatagatggatttccttccaaaataatatctcaccttcaatgtcttcttcactggcagtgttcttttaggatcaa |
35522992 |
T |
|
| Q |
315 |
aacactcactgtgtggacctttttccataagaaaaacaggctttttcacataaccacaccctccatttgctctaaacattccttgcatataccaaagtga |
414 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35522991 |
aacactcactgtgtggacctttctccataagaaaaacaggctttttcacataaccacaccctccatttgctctaaacattccttgcatataccaaagtga |
35522892 |
T |
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| Q |
415 |
ttttccatgcccctgat |
431 |
Q |
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| T |
35522891 |
ttttccatgcccctgat |
35522875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 351 - 420
Target Start/End: Complemental strand, 35509620 - 35509551
Alignment:
| Q |
351 |
caggctttttcacataaccacaccctccatttgctctaaacattccttgcatataccaaagtgattttcc |
420 |
Q |
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| T |
35509620 |
caggcttttttacataaccacatcctccatttgctctgaacattccttgcatcaaccagagtgattttcc |
35509551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 356 - 415
Target Start/End: Complemental strand, 35552911 - 35552852
Alignment:
| Q |
356 |
tttttcacataaccacaccctccatttgctctaaacattccttgcatataccaaagtgat |
415 |
Q |
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||||| |||||||||||||||||||| |||||||||||||| ||||| ||||||||||| |
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| T |
35552911 |
tttttaacataaccacaccctccattggctctaaacattccatgcatcaaccaaagtgat |
35552852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 188
Target Start/End: Complemental strand, 35509878 - 35509802
Alignment:
| Q |
112 |
acctttgtgtaaaagtccggaggagagaatgtatcaaagtgtgttttgctaaaatctgagttccacccatttcccat |
188 |
Q |
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| T |
35509878 |
acctttgtgtaaaagtctgggggagagaacatatcaaagtgtgtgggactaaaatctaagctccaaccatgtcccat |
35509802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 351 - 429
Target Start/End: Complemental strand, 31653853 - 31653775
Alignment:
| Q |
351 |
caggctttttcacataaccacaccctccatttgctctaaacattccttgcatataccaaagtgattttccatgcccctg |
429 |
Q |
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| T |
31653853 |
caggttttttcacataaccacaccctccattcgctttgaacatcccttgcatcaaccggagtgatttgccatgcccctg |
31653775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 429
Target Start/End: Complemental strand, 31704039 - 31703961
Alignment:
| Q |
351 |
caggctttttcacataaccacaccctccatttgctctaaacattccttgcatataccaaagtgattttccatgcccctg |
429 |
Q |
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| T |
31704039 |
caggttttttcacataaccacaccctccattcgctttgaacatcccttgcatcaaccggagtggtttgccatgcccctg |
31703961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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