View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5848_low_6 (Length: 463)
Name: NF5848_low_6
Description: NF5848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5848_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 13 - 278
Target Start/End: Original strand, 25190075 - 25190342
Alignment:
| Q |
13 |
atcatcacggacgtttagggtttcaaaaacactattaattgtttaaatgagataatgattaaatagctaattacagttaaagaagagggacctttcattg |
112 |
Q |
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| T |
25190075 |
atcatcatggacgtttagggtttcaaacacactattaattgtttaaatgagataacgattaaatagttaattatagttaaagaagagagacctttcattg |
25190174 |
T |
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| Q |
113 |
agtataattgaatgactaaatccatcatggtccattttaaaacaaagtcctatcaaataattagtgcttaataacaagtg--ttcaataatttaatctaa |
210 |
Q |
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| T |
25190175 |
aatataattgaatgactaaatccatcatggtccattttaaaacaaagtcctatcaaataattagtgcttaataacaagtgtattcaataatttaatctaa |
25190274 |
T |
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| Q |
211 |
cattatcattttcattcttccactaaaagttagatttcagaagaaagtaagtgtatttctctttcaag |
278 |
Q |
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| T |
25190275 |
cattatcattttcattcttccactaaaagttagatttcagaagaaagtaagtgtatttctctttcaag |
25190342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 320 - 447
Target Start/End: Original strand, 25190360 - 25190487
Alignment:
| Q |
320 |
tgacaactgaagtttaattcgaatatgctccacaaactctaaggaacaaactgagaagtgctataccttactgcacctaaatgaatcttaaaagttaaga |
419 |
Q |
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| T |
25190360 |
tgacaactgaagtttcattcgaatatgctccacaaactctaaggaacaaactgagaagtgctataccttactgcacctaaatgattcttaaaagttaaga |
25190459 |
T |
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| Q |
420 |
ctaagatgaggaaaagccagtttcaaag |
447 |
Q |
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| T |
25190460 |
ctaagatgaggaagagccagtttcaaag |
25190487 |
T |
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