View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5850-Insertion-1 (Length: 975)
Name: NF5850-Insertion-1
Description: NF5850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5850-Insertion-1 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 857; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 857; E-Value: 0
Query Start/End: Original strand, 8 - 975
Target Start/End: Original strand, 3176238 - 3177219
Alignment:
| Q |
8 |
aataacttacacataaatactaaacaaacaaaatgaaatacattaaataactcaacttcaacttacttatatttcaggaaggaattgcagttggaagaac |
107 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3176238 |
aataacttatacataaatactaaacaaacaaaatgaaatacattaaataactcaactttaacttacttatatttcaggaaggaattgcagttggaagaac |
3176337 |
T |
|
| Q |
108 |
atttgcttcacttcagaactaccaagtggatggaaacaaagaaatgatggctattggtcttatgaacatagctggctcttgttcttcatgttatgtcaca |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3176338 |
atttgcttcacttcagaactaccaagtggatggaaacaaagaaatgatggctattggtcttatgaacatagctggctcttgttcttcatgttatgtcaca |
3176437 |
T |
|
| Q |
208 |
acaggcaatgattcatcacaagtagttgttaaagaaatcaaaagtttttcaagaaaaatatcaattctaatcttttaaaaataatcttgcaggatccttt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3176438 |
acaggcaatgattcatcacaagtagttgttaaagaaatcaaaagtttttcaagaaaaatatcaattctaatcttttaaaaataatcttgcaggatccttt |
3176537 |
T |
|
| Q |
308 |
tctcgatcagccgttaactacaatgctggagcacagacagcagtatcaaatataatcatggcatcagcagttcttgtgacacttctgtttctcatgccgc |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3176538 |
tctcgatcagccgttaactacaatgctggagcacagacagcagtatcaaatataatcatggcatcagcagttcttgtgacacttctgtttctcatgccgc |
3176637 |
T |
|
| Q |
408 |
tgttctattacacaccaaacgttgtcttagcagccatcatcatcactgccgttatcggtctaattgattaccgtgccgcatacaaattgtggaaggttga |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3176638 |
tgttctattacacaccaaacgttgtcttagcagccatcatcatcactgccgttatcggtctaattgattaccgcgccgcatacaaattgtggaaggttga |
3176737 |
T |
|
| Q |
508 |
caagcttgatttcttagcttgtgtgtgctccttctttggtgttctctttatttccgttccattaggccttggagtcgcggtaagcttcaaaattcacatg |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3176738 |
caagcttgatttcttagcttgtgtgtgctccttcttcggtgttctctttatttccgttccattaggccttggagtcgcggtaagcttcaaaattcacatg |
3176837 |
T |
|
| Q |
608 |
tcttttctgtttttacaaaggatttaattcatatgcaccgaaaatgtaaaaattatttcactgtcgatcaatcataaccgtaagacgattaaaaatattt |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3176838 |
tcttttctgtttttacaaaggatttaattcatatacaccgaaaatgtaaaaattatttcactgtcgatcaatcataaccgtaagacgattaaaaatattt |
3176937 |
T |
|
| Q |
708 |
gacttcaatgataactactataaaagcattttcattacccttcgactgaattttccaaatcattttaggtggcaatatcagtcttcaaaatcctgcttca |
807 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3176938 |
gacttcaatgataactactataaaagcatgttcattacccttcgactgaattttccaaatcattttaggtggcaatatcagtcttcaaaatcctgcttca |
3177037 |
T |
|
| Q |
808 |
cgtctctaggccaaacacatcggttttgggaaacattccagggacac--atattccat-acctaatccaatataaag-agctataa-gat--ctgcattt |
900 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||| ||| |||||||| |
|
|
| T |
3177038 |
cgtctctaggccaaacacatcggttttgggaaacattccagggacaccaatattccataacctaatccaatataaagaagctataaggattcctgcattt |
3177137 |
T |
|
| Q |
901 |
atca-tttggctg-tgagtctcccatctactttg-caatgcaac-taactgc-agaaag--tagataatactccctctcgac |
975 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||| ||||||||| || |||| |||||| ||||||||||||||||||||| |
|
|
| T |
3177138 |
atcattttggctgttgagtctcccatctactttgccaatgcaacttacctgcaagaaaggttagataatactccctctcgac |
3177219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 2e-52; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 292 - 593
Target Start/End: Complemental strand, 44010895 - 44010594
Alignment:
| Q |
292 |
tcttgcaggatccttttctcgatcagccgttaactacaatgctggagcacagacagcagtatcaaatataatcatggcatcagcagttcttgtgacactt |
391 |
Q |
| |
|
||||||||||||||||||||| || || |||||||||||||||||||||||||| || || || |||||||||||||| ||||| ||||| ||||| ||| |
|
|
| T |
44010895 |
tcttgcaggatccttttctcggtcggctgttaactacaatgctggagcacagacggcggtttctaatataatcatggcttcagctgttctagtgaccctt |
44010796 |
T |
|
| Q |
392 |
ctgtttctcatgccgctgttctattacacaccaaacgttgtcttagcagccatcatcatcactgccgttatcggtctaattgattaccgtgccgcataca |
491 |
Q |
| |
|
||||||||||||| || ||||| || |||||||| || ||||||||| ||||||| || |||| || || || ||||| ||||| | || ||||| | |
|
|
| T |
44010795 |
ttgtttctcatgcctctcttctactatacaccaaatgtagtcttagcaaccatcattattgctgctgtgattggactaatagattatcaagcggcatata |
44010696 |
T |
|
| Q |
492 |
aattgtggaaggttgacaagcttgatttcttagcttgtgtgtgctccttctttggtgttctctttatttccgttccattaggccttggagtcgcggtaag |
591 |
Q |
| |
|
|| |||||||||||||||| ||||||||||| || || |||||||||| ||||| ||||| || ||||| || || |||||||| | |||||||||| |
|
|
| T |
44010695 |
aactgtggaaggttgacaaacttgatttcttggcctgcatgtgctccttttttggcgttctgttcatttctgtacctttaggcctcagtatcgcggtaag |
44010596 |
T |
|
| Q |
592 |
ct |
593 |
Q |
| |
|
|| |
|
|
| T |
44010595 |
ct |
44010594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 79 - 212
Target Start/End: Complemental strand, 44011103 - 44010970
Alignment:
| Q |
79 |
tttcaggaaggaattgcagttggaagaacatttgcttcacttcagaactaccaagtggatggaaacaaagaaatgatggctattggtcttatgaacatag |
178 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
44011103 |
tttcaggaaggaattgcagtaggtagaacatttgcagcacttaagaattaccaagtggatggaaacaaagaaatgatggctattggtattatgaacatag |
44011004 |
T |
|
| Q |
179 |
ctggctcttgttcttcatgttatgtcacaacagg |
212 |
Q |
| |
|
|||| |||||| ||||||| |||||||||||||| |
|
|
| T |
44011003 |
ctggatcttgtacttcatgctatgtcacaacagg |
44010970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University