View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5850-Insertion-2 (Length: 920)
Name: NF5850-Insertion-2
Description: NF5850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5850-Insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 425 - 772
Target Start/End: Original strand, 37894997 - 37895344
Alignment:
| Q |
425 |
atgttgggtctaactcactcttataaagtcgatttgtaacgtaagtaatgataannnnnnnaagcccagactttatttttatttgatatagaaacacaat |
524 |
Q |
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| T |
37894997 |
atgttgggtctaactcactcttataaagtcgatttgtaacgtgagtaatgataatttttttaagccctgactttatttttatttgatacagaaacacaat |
37895096 |
T |
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| Q |
525 |
attaaaaattggaagttatagaaaccaatccaattttttcttttatgtaaagccaaatgctccaaagtctaattaactaatctannnnnnnnnnnnnata |
624 |
Q |
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| T |
37895097 |
attaaaaattggaagttatagaaaccaatccaattttttcttttatgtaaagccaaatgctccaaagtctagttaactaatctatttttttttttttata |
37895196 |
T |
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| Q |
625 |
tgaaactgatgtgataattttgatatgagcttggttcatgttgtcttgttccaacaaattcaccacaaaaagtaaataacaatattatttaactcatacg |
724 |
Q |
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| T |
37895197 |
tgaaactgatgtgataattttgatatgagcttggttcatgttgtcttgttccaacaaattcactacaaaaagtaaataacaatattatttaactcatacg |
37895296 |
T |
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| Q |
725 |
atattcttccccttttttccttctgggcatttagaagaggtcattttc |
772 |
Q |
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| T |
37895297 |
atattcttccccttttttccttctgggcatttagaagaggtcattttc |
37895344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 9 - 403
Target Start/End: Original strand, 37894564 - 37894968
Alignment:
| Q |
9 |
cgtaattcatatttttcatccatatttttagatgatatgagccattggnnnnnnnnnnnnnnnn--gtcatttgcaaattattaccttgaatggtaactc |
106 |
Q |
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| T |
37894564 |
cgtaattcatatttttcatccatatttttagataatatgagccattggaaaaagaaaaaaaaaaaagtcatttgcaaattattaccttgaatggtaactc |
37894663 |
T |
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| Q |
107 |
aaggtcttagtttgtgtattcacattaagaagtgagaattttcattcactaggtcctagtttgtatattctcataaacaataccttttcaataagaaaaa |
206 |
Q |
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| T |
37894664 |
aaggtcttagtttgtgtattcacattaagaagtgagaattttcattcactaggtcctagtttgtatattctcataaacaataccttttcaataagaaaaa |
37894763 |
T |
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| Q |
207 |
acttatataatgttatattggtgcttatacccgttttggctgggtaataactatatggat-------attggaaatgagcaagggannnnnnnnnnnnnn |
299 |
Q |
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| T |
37894764 |
acttatataatgttatattggagattatacccgttttagctgggtaataactatatggatattggaaattggaaatgagcaagggatttttttttttttt |
37894863 |
T |
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| Q |
300 |
nggtcaagtggtagcaagggatttaatgccatggaaatagaatttgaattgat-nnnnnnntaatttaaatgtacattttacgtatgacactaacatcta |
398 |
Q |
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| T |
37894864 |
tggtcaagtggtagcaagggatttaataccatggaaatagaatttgaattgataaaaaaaataatttaaatgtacattttacgtatgacactaacatcta |
37894963 |
T |
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| Q |
399 |
tacaa |
403 |
Q |
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| T |
37894964 |
tacaa |
37894968 |
T |
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Back To:
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