View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5850-Insertion-3 (Length: 921)
Name: NF5850-Insertion-3
Description: NF5850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5850-Insertion-3 |
 | |
|
| [»] scaffold0268 (1 HSPs) |
| | |
|
| [»] scaffold0031 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 707; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 707; E-Value: 0
Query Start/End: Original strand, 121 - 908
Target Start/End: Complemental strand, 10195126 - 10194338
Alignment:
| Q |
121 |
tgtaaccactgcaatacaggaagaaatttttctggagatgggtgttggtatgttttttgtactgatatatatccgttattggtgtgtgtatctatagata |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10195126 |
tgtaaccactgcaatacaggaagaaatttttctggagatgggtgttggtatgttttttgtactgatatatatcctttattggtgtgtgtatctatagata |
10195027 |
T |
|
| Q |
221 |
ggatatttcttttttagcagttaaacagatatacagatgataaaattttgaactggtcattgatggattgtgatgtagtattaggtttttgaggcaacaa |
320 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
10195026 |
ggatatttcttttttagcagttaaatagatatacagatgataaaattttgaactggtcattgatggattgtgatgtagtatttggtttttgaggcaacaa |
10194927 |
T |
|
| Q |
321 |
actgagttatagcagcctcttaaaggcttacaaacctcccctttatgttgtatctgcattgactgaatgtccagaccctgtacgaggctttattctctca |
420 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10194926 |
actgagttatagcagcctcttaaagtcttacaaacctcctctttatgttgtatctgcattgacttaatgtccagaccctgtacgaggctttattctctca |
10194827 |
T |
|
| Q |
421 |
actgaatctttggttttccatgtattctttggttcaaaaaattcttctatttcctcccctaagatttcttcgtatgtttctttgtcaatttcaaagtttg |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10194826 |
actgaatctttggttttccatgtattctttggttcaaaaaattcttctatttcctcccctaagatttcttcgtatgtttctttgtcaatttcaaagtttg |
10194727 |
T |
|
| Q |
521 |
agcttgtcatattggcgtactctgcattagtgtagaagctcaaatttatttatgtgaagctttattgtagttcaagtattagtttgtgtttacatgaatt |
620 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10194726 |
agcttgtcttattggtgtactctgcattagtgtagaagctcaaatttatttatgtgaagctttattgtagttcaagtattagtttgtgtttacatgaatt |
10194627 |
T |
|
| Q |
621 |
ttagttttggggatttttggttctgcacaaattacccttgacagcacttgaagtaaagggtggtttcggttatctacagtttagtcctgaacctgtgatt |
720 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
10194626 |
ttagttttggggatttttggttctgcacaaattacccttgacagcacttgaagtaaagggtggtttcagttatctacagtttagttctgaacctgtgatt |
10194527 |
T |
|
| Q |
721 |
ttgctgattagctttagtggatttaaacggtgttttaatcaaaagctattgtattgagatgagctgtgctggcttgagttttgggaaacaaagcattcga |
820 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
10194526 |
ttgctgattagctttagtggatttaaacggtgttttaatcaaaagctattgtattgagatgagctgtgctggcttgagtttt-ggaaacaaagcattcta |
10194428 |
T |
|
| Q |
821 |
ttttgaat-agtaacgcatttaaagataaatatgatgaaagac-agcgaaggtgcaaaagatccgatcactacttatac-gtttagggttt |
908 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10194427 |
ttttgaataagtaacgcatttaaagataaatatgatgaaagacaagcgaa-gtgcaaaagatccgatcactacttatacggtttagggttt |
10194338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 13923893 - 13923996
Alignment:
| Q |
8 |
aaaggtttgccgttgtcgtaatctgtgattgtgttggttggtttagtattttaaacaattcatacttgtttgtaatatataatggaagtaaacatgaatc |
107 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||| ||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
13923893 |
aaaggtttgccgttgtcgtaatctctgattgtgttg----gtttagtattctaaacaattcgtacttgtttgtgatatataatggaagtaaaaatgaatc |
13923988 |
T |
|
| Q |
108 |
atttaatt |
115 |
Q |
| |
|
|||||||| |
|
|
| T |
13923989 |
atttaatt |
13923996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 173; Significance: 2e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 2e-92
Query Start/End: Original strand, 576 - 844
Target Start/End: Original strand, 19459034 - 19459304
Alignment:
| Q |
576 |
gaagctttattgtagttcaagtattagtttgtgtt--tacatgaattttagttttggggatttttggttctgcacaaattacccttgacagcacttgaag |
673 |
Q |
| |
|
||||||||||| ||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| | |
|
|
| T |
19459034 |
gaagctttattatagtttaagtattagcatgtgttcttacatgaattttagttttggggatttttggttctgcacaaattacctgtgacagcaattgatg |
19459133 |
T |
|
| Q |
674 |
taaagggtggtttcggttatctacagtttagtcctgaacctgtgattttgctgattagctttagtggatttaaacggtgttttaatcaaaagctattgta |
773 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
19459134 |
taaagggtggtttcagttatctacagtttagttctgaacctgtgattttgctgattagcttcagtggatttaaaccgtattttaatcaaaagctattgta |
19459233 |
T |
|
| Q |
774 |
ttgagatgagctgtgctggcttgagttttgggaaacaaagcattcgattttgaa-tagtaacgcatttaaag |
844 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| || ||||||||| ||||||||||| |||| |
|
|
| T |
19459234 |
ttgagatgagctgtgctggcttgagtttt-ggaaacaaagagtttgattttgaacaagtaacgcattcaaag |
19459304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 291 - 435
Target Start/End: Original strand, 19458868 - 19459012
Alignment:
| Q |
291 |
tgatgtagtattaggtttttgaggcaacaaactgagttatagcagcctcttaaaggcttacaaacctcccctttatgttgtatctgcattgactgaatgt |
390 |
Q |
| |
|
||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||| || |||| | |
|
|
| T |
19458868 |
tgatgtagtgttaggtttttgagttcacagactgagttatagcagcctcttaaaggcttacaagcctcccctttttattgtatctgcatcgaatgaaaat |
19458967 |
T |
|
| Q |
391 |
ccagaccctgtacgaggctttattctctcaactgaatctttggtt |
435 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
19458968 |
ccgaaccctgtacgaggctttattctctcaactgaacctttggtt |
19459012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0268 (Bit Score: 108; Significance: 9e-54; HSPs: 1)
Name: scaffold0268
Description:
Target: scaffold0268; HSP #1
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 17975 - 18082
Alignment:
| Q |
8 |
aaaggtttgccgttgtcgtaatctgtgattgtgttggttggtttagtattttaaacaattcatacttgtttgtaatatataatggaagtaaacatgaatc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17975 |
aaaggtttgccgttgtcgtaatctgtgattgtgttggttggtttagtattttaaacaattcatacttgtttgtaatatataatggaagtaaacatgaatc |
18074 |
T |
|
| Q |
108 |
atttaatt |
115 |
Q |
| |
|
|||||||| |
|
|
| T |
18075 |
atttaatt |
18082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 7e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 22286944 - 22287046
Alignment:
| Q |
8 |
aaaggtttgccgttgtcgtaatctgtgattgtgttggttggtttagtattttaaacaattcatacttgtttgtaatatataatggaagtaaacatgaatc |
107 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
22286944 |
aaaggtttgccgttgtcgtaatctatgattgtgttg----gtttagtattctaaacaattcatacttgtttgtgatatataatggaagtaaacatgaatc |
22287039 |
T |
|
| Q |
108 |
atttaat |
114 |
Q |
| |
|
||||||| |
|
|
| T |
22287040 |
atttaat |
22287046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 1e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 29064420 - 29064523
Alignment:
| Q |
8 |
aaaggtttgccgttgtcgtaatctgtgattgtgttggttggtttagtattttaaacaattcatacttgtttgtaatatataatggaagtaaacatgaatc |
107 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
29064420 |
aaaggtttaccgttgtcgtaatctctgattgtgttg----gtttagtattctaaacaattcatacttgtttgtgatatataatggaagtaaaaatgaatc |
29064515 |
T |
|
| Q |
108 |
atttaatt |
115 |
Q |
| |
|
|||||||| |
|
|
| T |
29064516 |
atttaatt |
29064523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 69; Significance: 2e-30; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 13 - 114
Target Start/End: Original strand, 90149 - 90246
Alignment:
| Q |
13 |
tttgccgttgtcgtaatctgtgattgtgttggttggtttagtattttaaacaattcatacttgtttgtaatatataatggaagtaaacatgaatcattta |
112 |
Q |
| |
|
||||||||||||||||||| ||||||||||| || ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
90149 |
tttgccgttgtcgtaatctatgattgtgttgttt----tagtattctaaacaattcatacttgtttgtgatatataatggaagtaaacatgaatcattta |
90244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 3e-29; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 2195797 - 2195900
Alignment:
| Q |
8 |
aaaggtttgccgttgtcgtaatctgtgattgtgttggttggtttagtattttaaacaattcatacttgtttgtaatatataatggaagtaaacatgaatc |
107 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||| |||||||| | |||||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
2195797 |
aaaggtttgccgttgtcataatctctgattgtgttg----gtttagtactctaaacaattcatacttgtttgtgatatataatggaagtaaaaatgaatc |
2195892 |
T |
|
| Q |
108 |
atttaatt |
115 |
Q |
| |
|
|||||||| |
|
|
| T |
2195893 |
atttaatt |
2195900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 24017894 - 24017792
Alignment:
| Q |
8 |
aaaggtttgccgttgtcgtaatctgtgattgtgttggttggtttagtattttaaacaattcatacttgtttgtaatatataatggaagtaaacatgaatc |
107 |
Q |
| |
|
|||| |||||||||||| |||||| |||||||||||||| || |||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
24017894 |
aaagctttgccgttgtcataatctatgattgtgttggtt----tactattctaaacaattcatacttgtttgtgatatataatggaagtaaacatgaatc |
24017799 |
T |
|
| Q |
108 |
atttaat |
114 |
Q |
| |
|
||||||| |
|
|
| T |
24017798 |
atttaat |
24017792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 3e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 15745202 - 15745099
Alignment:
| Q |
8 |
aaaggtttgccgttgtcgtaatctgtgattgtgttggttggtttagtattttaaacaattcatacttgtttgtaatatataatggaagtaaacatgaatc |
107 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||| ||||||| |||||||||| ||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
15745202 |
aaaggtttgtcgttgtcgtaatctctgattgtgttggtt----tagtattctaaacaattcgtacttgtttgtgatatataatggaagtaaaaatgaatc |
15745107 |
T |
|
| Q |
108 |
atttaatt |
115 |
Q |
| |
|
|||||||| |
|
|
| T |
15745106 |
atttaatt |
15745099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 7e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 44 - 114
Target Start/End: Original strand, 16536857 - 16536927
Alignment:
| Q |
44 |
gttggtttagtattttaaacaattcatacttgtttgtaatatataatggaagtaaacatgaatcatttaat |
114 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
16536857 |
gttggtttagtattctaaacaattcatacttgtttgtgatatataatggaagtaaacatgaatcatttaat |
16536927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 9867255 - 9867184
Alignment:
| Q |
44 |
gttggtttagtattttaaacaattcatacttgtttgtaatatataatggaagtaaacatgaatcatttaatt |
115 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
9867255 |
gttggtttactattctaaacaattcatacttgtttgtaatataaaatggaagtaaacatgaatcatttaatt |
9867184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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