View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5850-Insertion-5 (Length: 437)
Name: NF5850-Insertion-5
Description: NF5850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5850-Insertion-5 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 9 - 437
Target Start/End: Complemental strand, 40947997 - 40947573
Alignment:
| Q |
9 |
acacatgcatggaagaatcatgcatcatgtgtcagaggacaaaagcagatgatgggcttcctagatggttcagatacgaggatgggatttggaaagatga |
108 |
Q |
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| T |
40947997 |
acacatgcatggaagaatcatgcatcatgtgtcagaggacaaaagcagatgatggacttcctagatggttcagatacgaggatgggatttggaaagatga |
40947898 |
T |
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| Q |
109 |
tgaaataagttctcttgcactttaatttcagaagatnnnnnnnntcatactccattatatttctcttttactaaattactccctagatcttctaatttaa |
208 |
Q |
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| T |
40947897 |
tgaaataagttctcttgcactttaatttgagaagataaaaaaac-catactctattatatttctcttttactaaattactccctagatcttctaatttaa |
40947799 |
T |
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| Q |
209 |
ctcaaagtttctatttcaccatttatttannnnnnnctcaaattaatcatctaactttaggaattcaaaacacaatatatcaaaattgacannnnnnnnn |
308 |
Q |
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| T |
40947798 |
ctcaaagtttctatttcaccatttattta-ttttttctcaaattaatcatctaactttaggaattcaaaacacaatgtatgaaaattgaca--ttttttt |
40947702 |
T |
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| Q |
309 |
naattatgttcatatttaagagtagattaatgcttccctagctagtttgggttgaaatgtttacgtagttttatgtttgtgtataatattttgctgannn |
408 |
Q |
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| T |
40947701 |
taattatgttcatatttaagagtagattaatgcttccctagctagtttgggttgaaatgtttacgtagttttatgtttgtgtataatattttgctgattt |
40947602 |
T |
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| Q |
409 |
nnnngttgacttcacaaaagtaggttttc |
437 |
Q |
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| T |
40947601 |
ttttgttgacttcacacaagtaggttttc |
40947573 |
T |
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Back To:
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Target: scaffold0013 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 9 - 129
Target Start/End: Complemental strand, 38521 - 38401
Alignment:
| Q |
9 |
acacatgcatggaagaatcatgcatcatgtgtcagaggacaaaagcagatgatgggcttcctagatggttcagatacgaggatgggatttggaaagatga |
108 |
Q |
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||||||||||| |||||||||||||||||||||| | |||| || ||| |||||||||||| ||||| || || ||||| |||||||||||| |||| |
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| T |
38521 |
acacatgcatgaaagaatcatgcatcatgtgtcatcgaacaagagttgattgtgggcttcctaggtggtttaggtatgaggaagggatttggaaacatga |
38422 |
T |
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| Q |
109 |
tgaaataagttctcttgcact |
129 |
Q |
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| T |
38421 |
tgaagttagctctcttgcact |
38401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 131
Target Start/End: Original strand, 45656527 - 45656649
Alignment:
| Q |
9 |
acacatgcatggaagaatcatgcatcatgtgtcagaggacaaaagcagatgatgggcttcctagatggttcagatacgaggatgggatttggaaagatga |
108 |
Q |
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|||||||||| | ||||| |||||||||||| ||||||||| || |||||||||||| ||| ||||||| || ||||| |||||||||||| |||| |
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| T |
45656527 |
acacatgcatcaaggaatcgtgcatcatgtgtaagaggacaagagatgatgatgggcttgttaggtggttcaagtatgaggaagggatttggaaacatga |
45656626 |
T |
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| Q |
109 |
tgaaataagttctcttgcacttt |
131 |
Q |
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| T |
45656627 |
tgaagttagctctcttgcacttt |
45656649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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